1 HisKA#1
308-373 aa · 66 aa · 12.5% of protein
Raw token
HisKA:308:8.91e-17:373:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS07890
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS07890Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 530 aa (30.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
419-511 aa · 93 aa · 17.5% of protein
Raw token
HATPase_c:419:0.0000000000000519:511:97:109- Raw architecture: HisKA:308:8.91e-17:373:66:64#HATPase_c:419:0.0000000000000519:511:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1692576-1694844Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210555::NC_021009.1::G00014Context members
CC1_RS07885CC1_RS07890
Partner locus tags
CC1_RS07885CC1_RS07890
Partner old locus tags
CC1_16350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_208728592.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS07890Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval1 693 252-1 694 844 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 692 576-1 694 844 ntGCF_000210555::NC_021009.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span1 692 576-1 694 844 nt2 269 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 692 576 nt1 694 844 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS07885GCF_000210555#CC1_RS07885
RROmpR
1 692 576-1 693 289 nt · Forward (+)
CC1_RS07890GCF_000210555#CC1_RS07890
HKClassicCurrent focus
1 693 252-1 694 844 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS07890The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1355563
Simplified PFAM architecture for HKOC_1355563
PFAM domain coverage: 158 / 530 aa (29.8%)
1 aa530 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[309-373] | HATPase_c[419-511]
- Domain count: 2
- Matched identifier: HKOC_1355563
- Positioned domains: HisKA 309-373 ; HATPase_c 419-511
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS07890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key