1 Response_reg#1
7-110 aa · 104 aa · 13.2% of protein
Raw token
Response_reg:7:4.61e-26:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS07145
Response regulator, RpfG family
Coprococcus catus GD/7 · GCF_000210555
ClassRRTypeRpfGLength789 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210555#CC1_RS07145Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length789 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage380 / 789 aa (48.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa789 aa
Domain-by-domain annotation3 items
2 HD#2
166-299 aa · 134 aa · 17.0% of protein
Raw token
HD:166:0.0000000000000817:299:134:1103 GGDEF#3
647-788 aa · 142 aa · 18.0% of protein
Raw token
GGDEF:647:2.1e-37:788:157:160- Raw architecture: Response_reg:7:4.61e-26:110:105:111#HD:166:0.0000000000000817:299:134:110#GGDEF:647:2.1e-37:788:157:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210555::NC_021009.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1523778-1526147Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_14860RefSeq proteinWP_015513830.1
Context group ID
GCF_000210555::NC_021009.1::G00013Context members
CC1_RS07145
Partner locus tags
CC1_RS07145
Partner old locus tags
CC1_14860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015513830.1Primary protein accession used for annex mappings.
UniProt accessionD4J7E0Primary UniProt accession resolved in the annex database.
UniProt IDD4J7E0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS07145Primary locus identifier stored in the genes table.
Old locus tagCC1_14860Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval1 523 778-1 526 147 nt2 370 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 523 778-1 526 147 ntGCF_000210555::NC_021009.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span1 523 778-1 526 147 nt2 370 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 523 778 nt1 526 147 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CC1_RS07145GCF_000210555#CC1_RS07145
RRRpfGCurrent focus
1 523 778-1 526 147 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS07145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016557
Simplified PFAM architecture for RROC_0016557
PFAM domain coverage: 376 / 789 aa (47.7%)
1 aa789 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[7-111] | HD_5[190-319] | GGDEF[648-788]
- Domain count: 3
- Matched identifier: RROC_0016557
- Positioned domains: Response_reg 7-111 ; Response_reg 7-111 ; HD_5 190-319 ; HD_5 190-319 ; GGDEF 648-788 ; GGDEF 648-788
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS07145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key