1 Response_reg#1
3-119 aa · 117 aa · 43.3% of protein
Raw token
Response_reg:3:3.47e-22:119:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS03800
Response regulator, unclassified
Coprococcus catus GD/7 · GCF_000210555
ClassRRTypeunclassifiedLength270 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS03800Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length270 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage117 / 270 aa (43.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa270 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:3.47e-22:119:119:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span847368-850028Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_08080RefSeq proteinWP_015513270.1
Context group ID
GCF_000210555::NC_021009.1::G00009Context members
CC1_RS03800CC1_RS03805
Partner locus tags
CC1_RS03800CC1_RS03805
Partner old locus tags
CC1_08080CC1_08090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015513270.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2TMA9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2TMA9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS03800Primary locus identifier stored in the genes table.
Old locus tagCC1_08080Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval847 368-848 180 nt813 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span847 368-850 028 ntGCF_000210555::NC_021009.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span847 368-850 028 nt2 661 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
847 368 nt850 028 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS03800GCF_000210555#CC1_RS03800
RRunclassifiedCurrent focus
847 368-848 180 nt · Reverse (-)
CC1_RS03805GCF_000210555#CC1_RS03805
HKClassic
848 184-850 028 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS03800The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0614490
Simplified PFAM architecture for RROC_0614490
PFAM domain coverage: 84 / 270 aa (31.1%)
1 aa270 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[36-119]
- Domain count: 1
- Matched identifier: RROC_0614490
- Positioned domains: Response_reg 36-119 ; Response_reg 36-119
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS03800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key