1 sCache_like#1
62-131 aa · 70 aa · 15.7% of protein
Raw token
sCache_like:62:0.000000000249:131:70:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS03055
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS03055Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 446 aa (54.0%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa446 aa
Domain-by-domain annotation3 items
2 HisKA#2
224-289 aa · 66 aa · 14.8% of protein
Raw token
HisKA:224:3.44e-16:289:66:643 HATPase_c#3
341-445 aa · 105 aa · 23.5% of protein
Raw token
HATPase_c:341:5.84e-30:445:105:109- Raw architecture: sCache_like:62:0.000000000249:131:70:114#HisKA:224:3.44e-16:289:66:64#HATPase_c:341:5.84e-30:445:105:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span692986-695016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_06530RefSeq proteinWP_015513137.1
Context group ID
GCF_000210555::NC_021009.1::G00008Context members
CC1_RS03050CC1_RS03055
Partner locus tags
CC1_RS03050CC1_RS03055
Partner old locus tags
CC1_06520CC1_06530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015513137.1Primary protein accession used for annex mappings.
UniProt accessionD4J5C1Primary UniProt accession resolved in the annex database.
UniProt IDD4J5C1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS03055Primary locus identifier stored in the genes table.
Old locus tagCC1_06530Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval693 676-695 016 nt1 341 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span692 986-695 016 ntGCF_000210555::NC_021009.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span692 986-695 016 nt2 031 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
692 986 nt695 016 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS03050GCF_000210555#CC1_RS03050
RROmpR
692 986-693 669 nt · Forward (+)
CC1_RS03055GCF_000210555#CC1_RS03055
HKClassicCurrent focus
693 676-695 016 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS03055The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2010582
Simplified PFAM architecture for HKOC_2010582
PFAM domain coverage: 247 / 446 aa (55.4%)
1 aa446 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[60-135] | HisKA[224-289] | HATPase_c[340-444]
- Domain count: 3
- Matched identifier: HKOC_2010582
- Positioned domains: sCache_like 60-135 ; HisKA 224-289 ; HATPase_c 340-444
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS03055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key