1 Response_reg#1
4-116 aa · 113 aa · 49.8% of protein
Raw token
Response_reg:4:1.73e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS03050
Response regulator OmpR family
Coprococcus catus GD/7 · GCF_000210555
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS03050Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 227 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-222 aa · 70 aa · 30.8% of protein
Raw token
Trans_reg_C:153:1.65e-29:222:73:77- Raw architecture: Response_reg:4:1.73e-29:116:113:111#Trans_reg_C:153:1.65e-29:222:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span692986-695016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_06520RefSeq proteinWP_015513136.1
Context group ID
GCF_000210555::NC_021009.1::G00008Context members
CC1_RS03050CC1_RS03055
Partner locus tags
CC1_RS03050CC1_RS03055
Partner old locus tags
CC1_06520CC1_06530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015513136.1Primary protein accession used for annex mappings.
UniProt accessionD4J5C0Primary UniProt accession resolved in the annex database.
UniProt IDD4J5C0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS03050Primary locus identifier stored in the genes table.
Old locus tagCC1_06520Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval692 986-693 669 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span692 986-695 016 ntGCF_000210555::NC_021009.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span692 986-695 016 nt2 031 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
692 986 nt695 016 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS03050GCF_000210555#CC1_RS03050
RROmpRCurrent focus
692 986-693 669 nt · Forward (+)
CC1_RS03055GCF_000210555#CC1_RS03055
HKClassic
693 676-695 016 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS03050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354948
Simplified PFAM architecture for RROC_1354948
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[150-221]
- Domain count: 2
- Matched identifier: RROC_1354948
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Trans_reg_C 150-221 ; Trans_reg_C 150-221
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS03050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key