1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:6.48e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS01195
Response regulator OmpR family
Coprococcus catus GD/7 · GCF_000210555
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS01195Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:147:1.25e-29:221:75:77- Raw architecture: Response_reg:4:6.48e-29:113:111:111#Trans_reg_C:147:1.25e-29:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span267352-269282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_02600RefSeq proteinWP_008120506.1
Context group ID
GCF_000210555::NC_021009.1::G00004Context members
CC1_RS01195CC1_RS01200
Partner locus tags
CC1_RS01195CC1_RS01200
Partner old locus tags
CC1_02600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008120506.1Primary protein accession used for annex mappings.
UniProt accessionA0ABW8B078Primary UniProt accession resolved in the annex database.
UniProt IDA0ABW8B078_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS01195Primary locus identifier stored in the genes table.
Old locus tagCC1_02600Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval267 352-268 041 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span267 352-269 282 ntGCF_000210555::NC_021009.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span267 352-269 282 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
267 352 nt269 282 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS01195GCF_000210555#CC1_RS01195
RROmpRCurrent focus
267 352-268 041 nt · Forward (+)
CC1_RS01200GCF_000210555#CC1_RS01200
HKClassic
268 017-269 282 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS06375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247373
Simplified PFAM architecture for RROC_1247373
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1247373
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS06375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key