1 Response_reg#1
6-120 aa · 115 aa · 43.2% of protein
Raw token
Response_reg:6:5.22e-22:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS00585
Response regulator Spo0A family
Coprococcus catus GD/7 · GCF_000210555
ClassRRTypeSpo0ALength266 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210555#CC1_RS00585Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length266 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 266 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa266 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
155-258 aa · 104 aa · 39.1% of protein
Raw token
Spo0A_C:155:3.46e-63:258:104:104- Raw architecture: Response_reg:6:5.22e-22:120:115:111#Spo0A_C:155:3.46e-63:258:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210555::NC_021009.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span139919-140719Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_01300RefSeq proteinWP_015512708.1
Context group ID
GCF_000210555::NC_021009.1::G00001Context members
CC1_RS00585
Partner locus tags
CC1_RS00585
Partner old locus tags
CC1_01300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015512708.1Primary protein accession used for annex mappings.
UniProt accessionD4J434Primary UniProt accession resolved in the annex database.
UniProt IDD4J434_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS00585Primary locus identifier stored in the genes table.
Old locus tagCC1_01300Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval139 919-140 719 nt801 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 919-140 719 ntGCF_000210555::NC_021009.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span139 919-140 719 nt801 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 919 nt140 719 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CC1_RS00585GCF_000210555#CC1_RS00585
RRSpo0ACurrent focus
139 919-140 719 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS00585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0626522
Simplified PFAM architecture for RROC_0626522
PFAM domain coverage: 219 / 266 aa (82.3%)
1 aa266 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[155-258]
- Domain count: 2
- Matched identifier: RROC_0626522
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 155-258 ; Spo0A_C 155-258
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS00585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key