1 HAMP#1
85-155 aa · 71 aa · 17.2% of protein
Raw token
HAMP:85:0.000000000202:155:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RTO_RS01500
Histidine kinase, Classic
[Ruminococcus] torques L2-14 · GCF_000210035
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210035#RTO_RS01500Stable P2CS identifier used across views.
GenomeGCF_000210035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 413 aa (59.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 16.2% of protein
Raw token
HisKA:160:0.000000000119:226:67:643 HATPase_c#3
296-404 aa · 109 aa · 26.4% of protein
Raw token
HATPase_c:296:6.1e-31:404:109:109- Raw architecture: HAMP:85:0.000000000202:155:71:69#HisKA:160:0.000000000119:226:67:64#HATPase_c:296:6.1e-31:404:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210035::NC_021015.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span309145-311120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRTO_03230RefSeq proteinWP_015527737.1
Context group ID
GCF_000210035::NC_021015.1::G00006Context members
RTO_RS01495RTO_RS01500
Partner locus tags
RTO_RS01495RTO_RS01500
Partner old locus tags
RTO_03230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015527737.1Primary protein accession used for annex mappings.
UniProt accessionD4M1I5Primary UniProt accession resolved in the annex database.
UniProt IDD4M1I5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRTO_RS01500Primary locus identifier stored in the genes table.
Old locus tagRTO_03230Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021015.1Sequence record reported by the local genomic context database.
Genomic interval309 879-311 120 nt1 242 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span309 145-311 120 ntGCF_000210035::NC_021015.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210035::NC_021015.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021015.1All displayed genes belong to this local TCS context.
Neighborhood span309 145-311 120 nt1 976 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
309 145 nt311 120 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RTO_RS01495GCF_000210035#RTO_RS01495
RROmpR
309 145-309 882 nt · Forward (+)
RTO_RS01500GCF_000210035#RTO_RS01500
HKClassicCurrent focus
309 879-311 120 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS01500The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2328156
Simplified PFAM architecture for HKOC_2328156
PFAM domain coverage: 172 / 413 aa (41.6%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-225] | HATPase_c[299-404]
- Domain count: 2
- Matched identifier: HKOC_2328156
- Positioned domains: HisKA 160-225 ; HATPase_c 299-404
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS01500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 313 · GCF_000210035
AssemblyASM21003v1 · Chromosomehaploid
Genome composition3 341 681 bp · 41,0% GC[Ruminococcus] torques L2-14
Signal transduction countsGenes 63 · HK 30 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key