1 HAMP#1
171-240 aa · 70 aa · 15.0% of protein
Raw token
HAMP:171:0.0000000000061:240:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RTO_RS00200
Histidine kinase, Classic
[Ruminococcus] torques L2-14 · GCF_000210035
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210035#RTO_RS00200Stable P2CS identifier used across views.
GenomeGCF_000210035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 467 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-304 aa · 60 aa · 12.8% of protein
Raw token
HisKA:245:0.0000000000000566:304:60:643 HATPase_c#3
356-464 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:356:1.44e-31:464:109:109- Raw architecture: HAMP:171:0.0000000000061:240:70:69#HisKA:245:0.0000000000000566:304:60:64#HATPase_c:356:1.44e-31:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210035::NC_021015.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42197-44369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRTO_00480RefSeq proteinWP_015527526.1
Context group ID
GCF_000210035::NC_021015.1::G00001Context members
RTO_RS00200RTO_RS00205
Partner locus tags
RTO_RS00200RTO_RS00205
Partner old locus tags
RTO_00480RTO_00490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015527526.1Primary protein accession used for annex mappings.
UniProt accessionD4M0U6Primary UniProt accession resolved in the annex database.
UniProt IDD4M0U6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRTO_RS00200Primary locus identifier stored in the genes table.
Old locus tagRTO_00480Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021015.1Sequence record reported by the local genomic context database.
Genomic interval42 197-43 600 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 197-44 369 ntGCF_000210035::NC_021015.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210035::NC_021015.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021015.1All displayed genes belong to this local TCS context.
Neighborhood span42 197-44 369 nt2 173 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 197 nt44 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RTO_RS00200GCF_000210035#RTO_RS00200
HKClassicCurrent focus
42 197-43 600 nt · Reverse (-)
RTO_RS00205GCF_000210035#RTO_RS00205
RROmpR
43 668-44 369 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS00200The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747876
Simplified PFAM architecture for HKOC_1747876
PFAM domain coverage: 217 / 467 aa (46.5%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-239] | HisKA[246-307] | HATPase_c[357-465]
- Domain count: 3
- Matched identifier: HKOC_1747876
- Positioned domains: HAMP 194-239 ; HisKA 246-307 ; HATPase_c 357-465
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS00200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 313 · GCF_000210035
AssemblyASM21003v1 · Chromosomehaploid
Genome composition3 341 681 bp · 41,0% GC[Ruminococcus] torques L2-14
Signal transduction countsGenes 63 · HK 30 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key