1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:8.1e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROI_RS00225
Response regulator OmpR family
Roseburia intestinalis M50/1 · GCF_000209995
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000209995#ROI_RS00225Stable P2CS identifier used across views.
GenomeGCF_000209995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:156:1.07e-30:231:77:77- Raw architecture: Response_reg:6:8.1e-34:115:111:111#Trans_reg_C:156:1.07e-30:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000209995::NC_021040.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49852-52825Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROI_00590RefSeq proteinWP_015520092.1
Context group ID
GCF_000209995::NC_021040.1::G00004Context members
ROI_RS00225ROI_RS00230
Partner locus tags
ROI_RS00225ROI_RS00230
Partner old locus tags
ROI_00590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015520092.1Primary protein accession used for annex mappings.
UniProt accessionD4KUX2Primary UniProt accession resolved in the annex database.
UniProt IDD4KUX2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROI_RS00225Primary locus identifier stored in the genes table.
Old locus tagROI_00590Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021040.1Sequence record reported by the local genomic context database.
Genomic interval49 852-50 559 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 852-52 825 ntGCF_000209995::NC_021040.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209995::NC_021040.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021040.1All displayed genes belong to this local TCS context.
Neighborhood span49 852-52 825 nt2 974 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 852 nt52 825 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ROI_RS00225GCF_000209995#ROI_RS00225
RROmpRCurrent focus
49 852-50 559 nt · Forward (+)
ROI_RS00230GCF_000209995#ROI_RS00230
HKClassic
50 531-52 825 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209995#ROI_RS00225The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1017056
Simplified PFAM architecture for RROC_1017056
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1017056
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000209995#ROI_RS00225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 315 · GCF_000209995
AssemblyASM20999v1 · Chromosomehaploid
Genome composition4 143 550 bp · 42,5% GCRoseburia intestinalis M50/1
Signal transduction countsGenes 106 · HK 45 · RR 57CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key