1 Response_reg#1
4-108 aa · 105 aa · 44.5% of protein
Raw token
Response_reg:4:1.41e-17:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ROI_RS00150
Response regulator LytTR family
Roseburia intestinalis M50/1 · GCF_000209995
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000209995#ROI_RS00150Stable P2CS identifier used across views.
GenomeGCF_000209995Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 236 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-227 aa · 91 aa · 38.6% of protein
Raw token
LytTR:137:7.62e-20:227:97:98- Raw architecture: Response_reg:4:1.41e-17:108:108:111#LytTR:137:7.62e-20:227:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000209995::NC_021040.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28899-29609Genomic interval covered by the local TCS group.
Identifiers
Old locus tagROI_00410RefSeq proteinWP_015559327.1
Context group ID
GCF_000209995::NC_021040.1::G00003Context members
ROI_RS00150
Partner locus tags
ROI_RS00150
Partner old locus tags
ROI_00410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015559327.1Primary protein accession used for annex mappings.
UniProt accessionA0AAQ2U9U9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAQ2U9U9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagROI_RS00150Primary locus identifier stored in the genes table.
Old locus tagROI_00410Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021040.1Sequence record reported by the local genomic context database.
Genomic interval28 899-29 609 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 899-29 609 ntGCF_000209995::NC_021040.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000209995::NC_021040.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021040.1All displayed genes belong to this local TCS context.
Neighborhood span28 899-29 609 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 899 nt29 609 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ROI_RS00150GCF_000209995#ROI_RS00150
RRLytTRCurrent focus
28 899-29 609 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS13820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988524
Simplified PFAM architecture for RROC_0988524
PFAM domain coverage: 194 / 236 aa (82.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[139-227]
- Domain count: 2
- Matched identifier: RROC_0988524
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 139-227 ; LytTR 139-227
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS13820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 657 315 · GCF_000209995
AssemblyASM20999v1 · Chromosomehaploid
Genome composition4 143 550 bp · 42,5% GCRoseburia intestinalis M50/1
Signal transduction countsGenes 106 · HK 45 · RR 57CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key