1 sCache_2#1
162-274 aa · 113 aa · 15.8% of protein
Raw token
sCache_2:162:0.000000000157:274:115:152P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS13225
Histidine kinase, Hybrid
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeHybridLength714 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS13225Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
sCache_2HisKAHATPase_cResponse_reg
Protein length714 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage410 / 714 aa (57.4%)Merged over positioned domains only.
Domain description1 sCache_2,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa714 aa
Domain-by-domain annotation4 items
2 HisKA#2
342-403 aa · 62 aa · 8.7% of protein
Raw token
HisKA:342:0.000000112:403:62:643 HATPase_c#3
449-573 aa · 125 aa · 17.5% of protein
Raw token
HATPase_c:449:4.62e-26:573:126:1094 Response_reg#4
599-708 aa · 110 aa · 15.4% of protein
Raw token
Response_reg:599:0.0000000000000324:708:114:111- Raw architecture: sCache_2:162:0.000000000157:274:115:152#HisKA:342:0.000000112:403:62:64#HATPase_c:449:4.62e-26:573:126:109#Response_reg:599:0.0000000000000324:708:114:111
- Domain description: 1 sCache_2,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834361.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span27445-29589Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_02597RefSeq proteinWP_003509111.1
Context group ID
GCF_000189615::NZ_GL834361.1::G00046Context members
HMPREF9475_RS13225
Partner locus tags
HMPREF9475_RS13225
Partner old locus tags
HMPREF9475_02597
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003509111.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS13225Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_02597Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834361.1Sequence record reported by the local genomic context database.
Genomic interval27 445-29 589 nt2 145 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 445-29 589 ntGCF_000189615::NZ_GL834361.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834361.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834361.1All displayed genes belong to this local TCS context.
Neighborhood span27 445-29 589 nt2 145 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 445 nt29 589 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS13225GCF_000189615#HMPREF9475_RS13225
HKHybridCurrent focus
27 445-29 589 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406475#ARA57_RS14335Use this link to inspect the representative gene detail.
PFAM architecturesCache_2 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0716858
Simplified PFAM architecture for HKOC_0716858
PFAM domain coverage: 416 / 728 aa (57.1%)
1 aa728 aa
sCache_2HisKAHATPase_cResponse_reg
- Simplified architecture: sCache_2 + HisKA + HATPase_c + Response_reg
- Raw architecture: sCache_2[169-285] | HisKA[357-419] | HATPase_c[463-588] | Response_reg[613-722]
- Domain count: 4
- Matched identifier: HKOC_0716858
- Positioned domains: sCache_2 169-285 ; HisKA 357-419 ; HATPase_c 463-588 ; Response_reg 613-722
Cluster members and taxonomy
Representative gene: GCF_001406475#ARA57_RS14335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key