1 Response_reg#1
107-219 aa · 113 aa · 30.5% of protein
Raw token
Response_reg:107:1.01e-22:219:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS12990
Response regulator, FrzZ family
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassRRTypeFrzZLength371 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS12990Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage232 / 371 aa (62.5%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 Response_reg#2
248-366 aa · 119 aa · 32.1% of protein
Raw token
Response_reg:248:1.51e-30:366:119:111- Raw architecture: Response_reg:107:1.01e-22:219:115:111#Response_reg:248:1.51e-30:366:119:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834360.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span605863-606978Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_02552RefSeq proteinWP_242827578.1
Context group ID
GCF_000189615::NZ_GL834360.1::G00045Context members
HMPREF9475_RS12990
Partner locus tags
HMPREF9475_RS12990
Partner old locus tags
HMPREF9475_02552
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242827578.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS12990Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_02552Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834360.1Sequence record reported by the local genomic context database.
Genomic interval605 863-606 978 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span605 863-606 978 ntGCF_000189615::NZ_GL834360.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834360.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834360.1All displayed genes belong to this local TCS context.
Neighborhood span605 863-606 978 nt1 116 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
605 863 nt606 978 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS12990GCF_000189615#HMPREF9475_RS12990
RRFrzZCurrent focus
605 863-606 978 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015553815#I2F58_RS19600Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c + Response_reg + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0371445
Simplified PFAM architecture for RROC_0371445
PFAM domain coverage: 325 / 409 aa (79.5%)
1 aa409 aa
HATPase_cResponse_regResponse_reg
- Simplified architecture: HATPase_c + Response_reg + Response_reg
- Raw architecture: HATPase_c[34-126] | Response_reg[145-258] | Response_reg[286-403]
- Domain count: 3
- Matched identifier: RROC_0371445
- Positioned domains: HATPase_c 34-126 ; Response_reg 145-258 ; Response_reg 286-403
Cluster members and taxonomy
Representative gene: GCF_015553815#I2F58_RS19600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key