1 HisKA#1
254-319 aa · 66 aa · 13.8% of protein
Raw token
HisKA:254:0.00000000000147:319:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS09490
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS09490Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 480 aa (36.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
367-476 aa · 110 aa · 22.9% of protein
Raw token
HATPase_c:367:2.73e-32:476:110:109- Raw architecture: HisKA:254:0.00000000000147:319:66:64#HATPase_c:367:2.73e-32:476:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834359.1::G00036
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span484774-486216Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_01875RefSeq proteinWP_003508196.1
Context group ID
GCF_000189615::NZ_GL834359.1::G00036Context members
HMPREF9475_RS09490
Partner locus tags
HMPREF9475_RS09490
Partner old locus tags
HMPREF9475_01875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003508196.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS09490Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_01875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834359.1Sequence record reported by the local genomic context database.
Genomic interval484 774-486 216 nt1 443 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span484 774-486 216 ntGCF_000189615::NZ_GL834359.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834359.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834359.1All displayed genes belong to this local TCS context.
Neighborhood span484 774-486 216 nt1 443 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
484 774 nt486 216 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS09490GCF_000189615#HMPREF9475_RS09490
HKClassicCurrent focus
484 774-486 216 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS09490The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1619163
Simplified PFAM architecture for HKOC_1619163
PFAM domain coverage: 176 / 480 aa (36.7%)
1 aa480 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[254-319] | HATPase_c[367-476]
- Domain count: 2
- Matched identifier: HKOC_1619163
- Positioned domains: HisKA 254-319 ; HATPase_c 367-476
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS09490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key