1 PAS_3#1
69-127 aa · 59 aa · 6.7% of protein
Raw token
PAS_3:69:0.0000245:127:63:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS07690
Histidine kinase, Hybrid
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeHybridLength875 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS07690Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFHisKAHATPase_cResponse_reg
Protein length875 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage513 / 875 aa (58.6%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa875 aa
Domain-by-domain annotation5 items
2 GGDEF#2
144-290 aa · 147 aa · 16.8% of protein
Raw token
GGDEF:144:0.0000000000101:290:159:1603 HisKA#3
496-562 aa · 67 aa · 7.7% of protein
Raw token
HisKA:496:1.46e-16:562:67:644 HATPase_c#4
608-729 aa · 122 aa · 13.9% of protein
Raw token
HATPase_c:608:2.45e-28:729:122:1095 Response_reg#5
755-872 aa · 118 aa · 13.5% of protein
Raw token
Response_reg:755:3.76e-31:872:118:111- Raw architecture: PAS_3:69:0.0000245:127:63:89#GGDEF:144:0.0000000000101:290:159:160#HisKA:496:1.46e-16:562:67:64#HATPase_c:608:2.45e-28:729:122:109#Response_reg:755:3.76e-31:872:118:111
- Domain description: 1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834359.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span70649-73276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_01509RefSeq proteinWP_003507697.1
Context group ID
GCF_000189615::NZ_GL834359.1::G00031Context members
HMPREF9475_RS07690
Partner locus tags
HMPREF9475_RS07690
Partner old locus tags
HMPREF9475_01509
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003507697.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS07690Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_01509Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834359.1Sequence record reported by the local genomic context database.
Genomic interval70 649-73 276 nt2 628 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 649-73 276 ntGCF_000189615::NZ_GL834359.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834359.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834359.1All displayed genes belong to this local TCS context.
Neighborhood span70 649-73 276 nt2 628 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 649 nt73 276 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS07690GCF_000189615#HMPREF9475_RS07690
HKHybridCurrent focus
70 649-73 276 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS07690The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0453055
Simplified PFAM architecture for HKOC_0453055
PFAM domain coverage: 459 / 875 aa (52.5%)
1 aa875 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[145-298] | HisKA[497-562] | HATPase_c[609-729] | Response_reg[755-872]
- Domain count: 4
- Matched identifier: HKOC_0453055
- Positioned domains: GGDEF 145-298 ; HisKA 497-562 ; HATPase_c 609-729 ; Response_reg 755-872
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS07690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key