1 Response_reg#1
4-121 aa · 118 aa · 49.8% of protein
Raw token
Response_reg:4:9.89e-21:121:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS06120
Response regulator LytTR family
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS06120Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 237 aa (86.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-230 aa · 88 aa · 37.1% of protein
Raw token
LytTR:143:1.17e-21:230:93:98- Raw architecture: Response_reg:4:9.89e-21:121:120:111#LytTR:143:1.17e-21:230:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834358.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span398803-399516Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_01205RefSeq proteinWP_003507300.1
Context group ID
GCF_000189615::NZ_GL834358.1::G00027Context members
HMPREF9475_RS06120
Partner locus tags
HMPREF9475_RS06120
Partner old locus tags
HMPREF9475_01205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003507300.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6AW61Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6AW61_CLOSYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS06120Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_01205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834358.1Sequence record reported by the local genomic context database.
Genomic interval398 803-399 516 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span398 803-399 516 ntGCF_000189615::NZ_GL834358.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834358.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834358.1All displayed genes belong to this local TCS context.
Neighborhood span398 803-399 516 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
398 803 nt399 516 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS06120GCF_000189615#HMPREF9475_RS06120
RRLytTRCurrent focus
398 803-399 516 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS06120The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961830
Simplified PFAM architecture for RROC_0961830
PFAM domain coverage: 195 / 237 aa (82.3%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-110] | LytTR[143-230]
- Domain count: 2
- Matched identifier: RROC_0961830
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; LytTR 143-230 ; LytTR 143-230
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS06120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key