1 HisKA#1
188-244 aa · 57 aa · 14.4% of protein
Raw token
HisKA:188:0.00000000000257:244:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS05400
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeClassicLength397 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189615#HMPREF9475_RS05400Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length397 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 397 aa (41.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa397 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-394 aa · 106 aa · 26.7% of protein
Raw token
HATPase_c:289:9.59e-23:394:107:109- Raw architecture: HisKA:188:0.00000000000257:244:59:64#HATPase_c:289:9.59e-23:394:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189615::NZ_GL834358.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span225207-227068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_01059RefSeq proteinWP_003507123.1
Context group ID
GCF_000189615::NZ_GL834358.1::G00025Context members
HMPREF9475_RS05395HMPREF9475_RS05400
Partner locus tags
HMPREF9475_RS05395HMPREF9475_RS05400
Partner old locus tags
HMPREF9475_01058HMPREF9475_01059
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003507123.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS05400Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_01059Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834358.1Sequence record reported by the local genomic context database.
Genomic interval225 875-227 068 nt1 194 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span225 207-227 068 ntGCF_000189615::NZ_GL834358.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834358.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834358.1All displayed genes belong to this local TCS context.
Neighborhood span225 207-227 068 nt1 862 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
225 207 nt227 068 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9475_RS05395GCF_000189615#HMPREF9475_RS05395
RROmpR
225 207-225 878 nt · Forward (+)
HMPREF9475_RS05400GCF_000189615#HMPREF9475_RS05400
HKClassicCurrent focus
225 875-227 068 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS05400The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2469925
Simplified PFAM architecture for HKOC_2469925
PFAM domain coverage: 161 / 397 aa (40.6%)
1 aa397 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[188-244] | HATPase_c[291-394]
- Domain count: 2
- Matched identifier: HKOC_2469925
- Positioned domains: HisKA 188-244 ; HATPase_c 291-394
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS05400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key