1 Response_reg#1
7-113 aa · 107 aa · 48.0% of protein
Raw token
Response_reg:7:3.18e-25:113:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS05395
Response regulator OmpR family
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189615#HMPREF9475_RS05395Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 223 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-219 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:147:1.99e-24:219:77:77- Raw architecture: Response_reg:7:3.18e-25:113:107:111#Trans_reg_C:147:1.99e-24:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189615::NZ_GL834358.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span225207-227068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_01058RefSeq proteinWP_003503977.1
Context group ID
GCF_000189615::NZ_GL834358.1::G00025Context members
HMPREF9475_RS05395HMPREF9475_RS05400
Partner locus tags
HMPREF9475_RS05395HMPREF9475_RS05400
Partner old locus tags
HMPREF9475_01058HMPREF9475_01059
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003503977.1Primary protein accession used for annex mappings.
UniProt accessionE7GSS3Primary UniProt accession resolved in the annex database.
UniProt IDE7GSS3_CLOS6Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS05395Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_01058Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834358.1Sequence record reported by the local genomic context database.
Genomic interval225 207-225 878 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span225 207-227 068 ntGCF_000189615::NZ_GL834358.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834358.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834358.1All displayed genes belong to this local TCS context.
Neighborhood span225 207-227 068 nt1 862 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
225 207 nt227 068 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9475_RS05395GCF_000189615#HMPREF9475_RS05395
RROmpRCurrent focus
225 207-225 878 nt · Forward (+)
HMPREF9475_RS05400GCF_000189615#HMPREF9475_RS05400
HKClassic
225 875-227 068 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS20440Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587786
Simplified PFAM architecture for RROC_1587786
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1587786
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS20440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key