1 SBP_bac_3#1
52-246 aa · 195 aa · 20.9% of protein
Raw token
SBP_bac_3:52:2.79e-24:246:212:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS05265
Histidine kinase, Hybrid
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeHybridLength935 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS05265Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length935 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage700 / 935 aa (74.9%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa935 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
286-490 aa · 205 aa · 21.9% of protein
Raw token
SBP_bac_3:286:0.000000000018:490:222:2243 HisKA#3
559-625 aa · 67 aa · 7.2% of protein
Raw token
HisKA:559:4.17e-16:625:67:644 HATPase_c#4
671-785 aa · 115 aa · 12.3% of protein
Raw token
HATPase_c:671:7.76e-32:785:115:1095 Response_reg#5
808-925 aa · 118 aa · 12.6% of protein
Raw token
Response_reg:808:5.81e-31:925:118:111- Raw architecture: SBP_bac_3:52:2.79e-24:246:212:224#SBP_bac_3:286:0.000000000018:490:222:224#HisKA:559:4.17e-16:625:67:64#HATPase_c:671:7.76e-32:785:115:109#Response_reg:808:5.81e-31:925:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834358.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span191235-194042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_01033RefSeq proteinWP_003507103.1
Context group ID
GCF_000189615::NZ_GL834358.1::G00022Context members
HMPREF9475_RS05265
Partner locus tags
HMPREF9475_RS05265
Partner old locus tags
HMPREF9475_01033
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003507103.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS05265Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_01033Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834358.1Sequence record reported by the local genomic context database.
Genomic interval191 235-194 042 nt2 808 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 235-194 042 ntGCF_000189615::NZ_GL834358.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834358.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834358.1All displayed genes belong to this local TCS context.
Neighborhood span191 235-194 042 nt2 808 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 235 nt194 042 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS05265GCF_000189615#HMPREF9475_RS05265
HKHybridCurrent focus
191 235-194 042 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS05265The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0345775
Simplified PFAM architecture for HKOC_0345775
PFAM domain coverage: 497 / 935 aa (53.2%)
1 aa935 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[50-247] | HisKA[559-625] | HATPase_c[671-785] | Response_reg[808-924]
- Domain count: 4
- Matched identifier: HKOC_0345775
- Positioned domains: SBP_bac_3 50-247 ; HisKA 559-625 ; HATPase_c 671-785 ; Response_reg 808-924
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS05265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key