1 HisKA#1
335-400 aa · 66 aa · 9.3% of protein
Raw token
HisKA:335:0.00000000000000311:400:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS05255
Histidine kinase, Hybrid
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeHybridLength710 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS05255Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length710 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 710 aa (42.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa710 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
447-564 aa · 118 aa · 16.6% of protein
Raw token
HATPase_c:447:1.21e-28:564:119:1093 Response_reg#3
589-703 aa · 115 aa · 16.2% of protein
Raw token
Response_reg:589:4.73e-28:703:115:111- Raw architecture: HisKA:335:0.00000000000000311:400:66:64#HATPase_c:447:1.21e-28:564:119:109#Response_reg:589:4.73e-28:703:115:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834358.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span187201-189333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_01031RefSeq proteinWP_003507099.1
Context group ID
GCF_000189615::NZ_GL834358.1::G00021Context members
HMPREF9475_RS05255
Partner locus tags
HMPREF9475_RS05255
Partner old locus tags
HMPREF9475_01031
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003507099.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS05255Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_01031Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834358.1Sequence record reported by the local genomic context database.
Genomic interval187 201-189 333 nt2 133 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span187 201-189 333 ntGCF_000189615::NZ_GL834358.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834358.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834358.1All displayed genes belong to this local TCS context.
Neighborhood span187 201-189 333 nt2 133 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
187 201 nt189 333 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS05255GCF_000189615#HMPREF9475_RS05255
HKHybridCurrent focus
187 201-189 333 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS05255The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0750624
Simplified PFAM architecture for HKOC_0750624
PFAM domain coverage: 298 / 710 aa (42.0%)
1 aa710 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[335-400] | HATPase_c[447-563] | Response_reg[589-703]
- Domain count: 3
- Matched identifier: HKOC_0750624
- Positioned domains: HisKA 335-400 ; HATPase_c 447-563 ; Response_reg 589-703
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS05255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key