1 Response_reg#1
2-110 aa · 109 aa · 38.2% of protein
Raw token
Response_reg:2:0.00000000000698:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS05155
Response regulator, PleD family
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassRRTypePleDLength285 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS05155Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length285 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage258 / 285 aa (90.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa285 aa
Domain-by-domain annotation2 items
2 GGDEF#2
130-278 aa · 149 aa · 52.3% of protein
Raw token
GGDEF:130:9.79e-34:278:160:160- Raw architecture: Response_reg:2:0.00000000000698:110:111:111#GGDEF:130:9.79e-34:278:160:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834358.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span163704-164561Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_01011RefSeq proteinWP_003507063.1
Context group ID
GCF_000189615::NZ_GL834358.1::G00018Context members
HMPREF9475_RS05155
Partner locus tags
HMPREF9475_RS05155
Partner old locus tags
HMPREF9475_01011
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003507063.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS05155Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_01011Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834358.1Sequence record reported by the local genomic context database.
Genomic interval163 704-164 561 nt858 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span163 704-164 561 ntGCF_000189615::NZ_GL834358.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834358.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834358.1All displayed genes belong to this local TCS context.
Neighborhood span163 704-164 561 nt858 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 704 nt164 561 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS05155GCF_000189615#HMPREF9475_RS05155
RRPleDCurrent focus
163 704-164 561 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS05155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0591256
Simplified PFAM architecture for RROC_0591256
PFAM domain coverage: 255 / 285 aa (89.5%)
1 aa285 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[3-110] | GGDEF[131-277]
- Domain count: 2
- Matched identifier: RROC_0591256
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; GGDEF 131-277 ; GGDEF 131-277
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS05155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key