1 Response_reg#1
3-114 aa · 112 aa · 46.7% of protein
Raw token
Response_reg:3:7.32e-23:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS04565
Response regulator LytTR family
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS04565Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 240 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-227 aa · 90 aa · 37.5% of protein
Raw token
LytTR:138:0.000000000294:227:95:98- Raw architecture: Response_reg:3:7.32e-23:114:114:111#LytTR:138:0.000000000294:227:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834358.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span25632-26354Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_00892RefSeq proteinWP_003506814.1
Context group ID
GCF_000189615::NZ_GL834358.1::G00017Context members
HMPREF9475_RS04565
Partner locus tags
HMPREF9475_RS04565
Partner old locus tags
HMPREF9475_00892
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003506814.1Primary protein accession used for annex mappings.
UniProt accessionE7GLM0Primary UniProt accession resolved in the annex database.
UniProt IDE7GLM0_CLOS6Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS04565Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_00892Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834358.1Sequence record reported by the local genomic context database.
Genomic interval25 632-26 354 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 632-26 354 ntGCF_000189615::NZ_GL834358.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834358.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834358.1All displayed genes belong to this local TCS context.
Neighborhood span25 632-26 354 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 632 nt26 354 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS04565GCF_000189615#HMPREF9475_RS04565
RRLytTRCurrent focus
25 632-26 354 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS09335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882384
Simplified PFAM architecture for RROC_0882384
PFAM domain coverage: 202 / 240 aa (84.2%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[138-226]
- Domain count: 2
- Matched identifier: RROC_0882384
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; LytTR 138-226 ; LytTR 138-226
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS09335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key