1 HAMP#1
60-128 aa · 69 aa · 18.4% of protein
Raw token
HAMP:60:0.000000000157:128:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS03955
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeClassicLength374 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189615#HMPREF9475_RS03955Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 374 aa (65.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa374 aa
Domain-by-domain annotation3 items
2 HisKA#2
140-206 aa · 67 aa · 17.9% of protein
Raw token
HisKA:140:1.09e-17:206:67:643 HATPase_c#3
252-360 aa · 109 aa · 29.1% of protein
Raw token
HATPase_c:252:7.4e-28:360:110:109- Raw architecture: HAMP:60:0.000000000157:128:70:69#HisKA:140:1.09e-17:206:67:64#HATPase_c:252:7.4e-28:360:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189615::NZ_GL834357.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span916718-918551Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_00772RefSeq proteinWP_003506622.1
Context group ID
GCF_000189615::NZ_GL834357.1::G00016Context members
HMPREF9475_RS03950HMPREF9475_RS03955
Partner locus tags
HMPREF9475_RS03950HMPREF9475_RS03955
Partner old locus tags
HMPREF9475_00771HMPREF9475_00772
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003506622.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS03955Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_00772Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834357.1Sequence record reported by the local genomic context database.
Genomic interval917 427-918 551 nt1 125 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span916 718-918 551 ntGCF_000189615::NZ_GL834357.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834357.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834357.1All displayed genes belong to this local TCS context.
Neighborhood span916 718-918 551 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
916 718 nt918 551 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9475_RS03950GCF_000189615#HMPREF9475_RS03950
RROmpR
916 718-917 422 nt · Forward (+)
HMPREF9475_RS03955GCF_000189615#HMPREF9475_RS03955
HKClassicCurrent focus
917 427-918 551 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS03955The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2657529
Simplified PFAM architecture for HKOC_2657529
PFAM domain coverage: 220 / 374 aa (58.8%)
1 aa374 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-127] | HisKA[140-205] | HATPase_c[253-360]
- Domain count: 3
- Matched identifier: HKOC_2657529
- Positioned domains: HAMP 82-127 ; HisKA 140-205 ; HATPase_c 253-360
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS03955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key