1 Response_reg#1
6-114 aa · 109 aa · 46.4% of protein
Raw token
Response_reg:6:1.18e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS03845
Response regulator OmpR family
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189615#HMPREF9475_RS03845Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 33.2% of protein
Raw token
Trans_reg_C:156:3.5e-27:233:78:77- Raw architecture: Response_reg:6:1.18e-37:114:111:111#Trans_reg_C:156:3.5e-27:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189615::NZ_GL834357.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span891451-893476Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_00750RefSeq proteinWP_003497172.1
Context group ID
GCF_000189615::NZ_GL834357.1::G00015Context members
HMPREF9475_RS03840HMPREF9475_RS03845
Partner locus tags
HMPREF9475_RS03840HMPREF9475_RS03845
Partner old locus tags
HMPREF9475_00749HMPREF9475_00750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003497172.1Primary protein accession used for annex mappings.
UniProt accessionE7GGQ0Primary UniProt accession resolved in the annex database.
UniProt IDE7GGQ0_CLOS6Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS03845Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_00750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834357.1Sequence record reported by the local genomic context database.
Genomic interval892 769-893 476 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span891 451-893 476 ntGCF_000189615::NZ_GL834357.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834357.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834357.1All displayed genes belong to this local TCS context.
Neighborhood span891 451-893 476 nt2 026 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
891 451 nt893 476 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9475_RS03840GCF_000189615#HMPREF9475_RS03840
HKClassic
891 451-892 776 nt · Reverse (-)
HMPREF9475_RS03845GCF_000189615#HMPREF9475_RS03845
RROmpRCurrent focus
892 769-893 476 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS00520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016999
Simplified PFAM architecture for RROC_1016999
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_1016999
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS00520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key