1 HisKA#1
341-406 aa · 66 aa · 9.0% of protein
Raw token
HisKA:341:4.33e-17:406:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS02480
Histidine kinase, Hybrid
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeHybridLength730 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189615#HMPREF9475_RS02480Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length730 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 730 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa730 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
454-571 aa · 118 aa · 16.2% of protein
Raw token
HATPase_c:454:7.02e-32:571:118:1093 Response_reg#3
605-721 aa · 117 aa · 16.0% of protein
Raw token
Response_reg:605:2.54e-28:721:117:111- Raw architecture: HisKA:341:4.33e-17:406:66:64#HATPase_c:454:7.02e-32:571:118:109#Response_reg:605:2.54e-28:721:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189615::NZ_GL834357.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span562523-564715Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_00490RefSeq proteinWP_242828737.1
Context group ID
GCF_000189615::NZ_GL834357.1::G00011Context members
HMPREF9475_RS02480
Partner locus tags
HMPREF9475_RS02480
Partner old locus tags
HMPREF9475_00490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242828737.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5EYG6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5EYG6_CLOSYDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS02480Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_00490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834357.1Sequence record reported by the local genomic context database.
Genomic interval562 523-564 715 nt2 193 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span562 523-564 715 ntGCF_000189615::NZ_GL834357.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834357.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834357.1All displayed genes belong to this local TCS context.
Neighborhood span562 523-564 715 nt2 193 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
562 523 nt564 715 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9475_RS02480GCF_000189615#HMPREF9475_RS02480
HKHybridCurrent focus
562 523-564 715 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189615#HMPREF9475_RS02480The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0712149
Simplified PFAM architecture for HKOC_0712149
PFAM domain coverage: 300 / 730 aa (41.1%)
1 aa730 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[341-406] | HATPase_c[454-571] | Response_reg[605-720]
- Domain count: 3
- Matched identifier: HKOC_0712149
- Positioned domains: HisKA 341-406 ; HATPase_c 454-571 ; Response_reg 605-720
Cluster members and taxonomy
Representative gene: GCF_000189615#HMPREF9475_RS02480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key