1 HAMP#1
145-216 aa · 72 aa · 16.1% of protein
Raw token
HAMP:145:0.000000000919:216:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9475_RS01975
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14673 · GCF_000189615
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189615#HMPREF9475_RS01975Stable P2CS identifier used across views.
GenomeGCF_000189615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 448 aa (52.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-284 aa · 59 aa · 13.2% of protein
Raw token
HisKA:226:0.00000000243:284:59:643 HATPase_c#3
331-434 aa · 104 aa · 23.2% of protein
Raw token
HATPase_c:331:6.38e-21:434:107:109- Raw architecture: HAMP:145:0.000000000919:216:72:69#HisKA:226:0.00000000243:284:59:64#HATPase_c:331:6.38e-21:434:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189615::NZ_GL834357.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span470967-473661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9475_00386RefSeq proteinWP_003506104.1
Context group ID
GCF_000189615::NZ_GL834357.1::G00010Context members
HMPREF9475_RS01975HMPREF9475_RS01980
Partner locus tags
HMPREF9475_RS01975HMPREF9475_RS01980
Partner old locus tags
HMPREF9475_00386HMPREF9475_00387
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003506104.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9475_RS01975Primary locus identifier stored in the genes table.
Old locus tagHMPREF9475_00386Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834357.1Sequence record reported by the local genomic context database.
Genomic interval470 967-472 313 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span470 967-473 661 ntGCF_000189615::NZ_GL834357.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189615::NZ_GL834357.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834357.1All displayed genes belong to this local TCS context.
Neighborhood span470 967-473 661 nt2 695 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
470 967 nt473 661 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9475_RS01975GCF_000189615#HMPREF9475_RS01975
HKClassicCurrent focus
470 967-472 313 nt · Forward (+)
HMPREF9475_RS01980GCF_000189615#HMPREF9475_RS01980
RRunclassified
472 288-473 661 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_039753075#ABHS84_RS10235Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1984347
Simplified PFAM architecture for HKOC_1984347
PFAM domain coverage: 216 / 449 aa (48.1%)
1 aa449 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[162-215] | HisKA[226-284] | HATPase_c[332-434]
- Domain count: 3
- Matched identifier: HKOC_1984347
- Positioned domains: HAMP 162-215 ; HisKA 226-284 ; HATPase_c 332-434
Cluster members and taxonomy
Representative gene: GCF_039753075#ABHS84_RS10235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 741 · GCF_000189615
AssemblyClos_symb_WAL_14673_V2 · Scaffoldhaploid
Genome composition4 916 964 bp · 48,0% GC[Clostridium] symbiosum WAL-14673
Signal transduction countsGenes 109 · HK 55 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key