1 HAMP#1
169-238 aa · 70 aa · 15.0% of protein
Raw token
HAMP:169:0.000000000293:238:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS20005
Histidine kinase, Classic
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000189595#HMPREF9474_RS20005Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 467 aa (53.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
243-307 aa · 65 aa · 13.9% of protein
Raw token
HisKA:243:1.83e-17:307:65:643 HATPase_c#3
353-465 aa · 113 aa · 24.2% of protein
Raw token
HATPase_c:353:7.71e-31:465:113:109- Raw architecture: HAMP:169:0.000000000293:238:70:69#HisKA:243:1.83e-17:307:65:64#HATPase_c:353:7.71e-31:465:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000189595::NZ_GL834317.1::G00054
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span87692-89095Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_03883RefSeq proteinWP_003503824.1
Context group ID
GCF_000189595::NZ_GL834317.1::G00054Context members
HMPREF9474_RS20005
Partner locus tags
HMPREF9474_RS20005
Partner old locus tags
HMPREF9474_03883
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003503824.1Primary protein accession used for annex mappings.
UniProt accessionE7GSI8Primary UniProt accession resolved in the annex database.
UniProt IDE7GSI8_CLOS6Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS20005Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_03883Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834317.1Sequence record reported by the local genomic context database.
Genomic interval87 692-89 095 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span87 692-89 095 ntGCF_000189595::NZ_GL834317.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834317.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834317.1All displayed genes belong to this local TCS context.
Neighborhood span87 692-89 095 nt1 404 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 692 nt89 095 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9474_RS20005GCF_000189595#HMPREF9474_RS20005
HKClassicCurrent focus
87 692-89 095 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS20005The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747837
Simplified PFAM architecture for HKOC_1747837
PFAM domain coverage: 218 / 467 aa (46.7%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-237] | HisKA[243-307] | HATPase_c[356-464]
- Domain count: 3
- Matched identifier: HKOC_1747837
- Positioned domains: HAMP 194-237 ; HisKA 243-307 ; HATPase_c 356-464
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS20005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key