1 Response_reg#1
3-110 aa · 108 aa · 45.2% of protein
Raw token
Response_reg:3:3.53e-24:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9474_RS12875
Response regulator LytTR family
[Clostridium] symbiosum WAL-14163 · GCF_000189595
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000189595#HMPREF9474_RS12875Stable P2CS identifier used across views.
GenomeGCF_000189595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 239 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-237 aa · 95 aa · 39.7% of protein
Raw token
LytTR:143:1.66e-27:237:95:98- Raw architecture: Response_reg:3:3.53e-24:110:110:111#LytTR:143:1.66e-27:237:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000189595::NZ_GL834310.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span286464-288930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9474_02521RefSeq proteinWP_003501023.1
Context group ID
GCF_000189595::NZ_GL834310.1::G00041Context members
HMPREF9474_RS12875HMPREF9474_RS12880
Partner locus tags
HMPREF9474_RS12875HMPREF9474_RS12880
Partner old locus tags
HMPREF9474_02521HMPREF9474_02522
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003501023.1Primary protein accession used for annex mappings.
UniProt accessionE7GNM6Primary UniProt accession resolved in the annex database.
UniProt IDE7GNM6_CLOS6Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9474_RS12875Primary locus identifier stored in the genes table.
Old locus tagHMPREF9474_02521Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL834310.1Sequence record reported by the local genomic context database.
Genomic interval286 464-287 183 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span286 464-288 930 ntGCF_000189595::NZ_GL834310.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000189595::NZ_GL834310.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL834310.1All displayed genes belong to this local TCS context.
Neighborhood span286 464-288 930 nt2 467 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
286 464 nt288 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9474_RS12875GCF_000189595#HMPREF9474_RS12875
RRLytTRCurrent focus
286 464-287 183 nt · Reverse (-)
HMPREF9474_RS12880GCF_000189595#HMPREF9474_RS12880
HKClassic
287 161-288 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000189595#HMPREF9474_RS12875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0905833
Simplified PFAM architecture for RROC_0905833
PFAM domain coverage: 203 / 239 aa (84.9%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-110] | LytTR[143-237]
- Domain count: 2
- Matched identifier: RROC_0905833
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; LytTR 143-237 ; LytTR 143-237
Cluster members and taxonomy
Representative gene: GCF_000189595#HMPREF9474_RS12875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 742 740 · GCF_000189595
AssemblyClos_symb_WAL_14163_V1 · Scaffoldhaploid
Genome composition5 352 498 bp · 47,5% GC[Clostridium] symbiosum WAL-14163
Signal transduction countsGenes 111 · HK 54 · RR 54CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnoclostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnoclostridium
Related genes
Preview from the same derived genome key