1 Response_reg#1
4-111 aa · 108 aa · 49.3% of protein
Raw token
Response_reg:4:2.8e-29:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS18185
Response regulator OmpR family
Coprobacillus cateniformis · GCF_000186525
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000186525#HMPREF9488_RS18185Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 219 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-217 aa · 76 aa · 34.7% of protein
Raw token
Trans_reg_C:142:5.52e-29:217:77:77- Raw architecture: Response_reg:4:2.8e-29:111:111:111#Trans_reg_C:142:5.52e-29:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000186525::NZ_GL636585.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41816-42475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_03598RefSeq proteinWP_017143978.1
Context group ID
GCF_000186525::NZ_GL636585.1::G00036Context members
HMPREF9488_RS18185
Partner locus tags
HMPREF9488_RS18185
Partner old locus tags
HMPREF9488_03598
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_017143978.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS18185Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_03598Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636585.1Sequence record reported by the local genomic context database.
Genomic interval41 816-42 475 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 816-42 475 ntGCF_000186525::NZ_GL636585.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636585.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636585.1All displayed genes belong to this local TCS context.
Neighborhood span41 816-42 475 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 816 nt42 475 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9488_RS18185GCF_000186525#HMPREF9488_RS18185
RROmpRCurrent focus
41 816-42 475 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS18185The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1767789
Simplified PFAM architecture for RROC_1767789
PFAM domain coverage: 184 / 219 aa (84.0%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[142-217]
- Domain count: 2
- Matched identifier: RROC_1767789
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 142-217 ; Trans_reg_C 142-217
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS18185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key