1 Response_reg#1
5-113 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:5:7.43e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS00140
Response regulator OmpR family
Coprobacillus cateniformis · GCF_000186525
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS00140Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.9% of protein
Raw token
Trans_reg_C:154:1.03e-29:229:77:77- Raw architecture: Response_reg:5:7.43e-30:113:110:111#Trans_reg_C:154:1.03e-29:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636577.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25090-27927Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_00028RefSeq proteinWP_008787156.1
Context group ID
GCF_000186525::NZ_GL636577.1::G00001Context members
HMPREF9488_RS00135HMPREF9488_RS00140
Partner locus tags
HMPREF9488_RS00135HMPREF9488_RS00140
Partner old locus tags
HMPREF9488_00027HMPREF9488_00028
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008787156.1Primary protein accession used for annex mappings.
UniProt accessionE7G5J0Primary UniProt accession resolved in the annex database.
UniProt IDE7G5J0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS00140Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_00028Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636577.1Sequence record reported by the local genomic context database.
Genomic interval27 232-27 927 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 090-27 927 ntGCF_000186525::NZ_GL636577.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636577.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636577.1All displayed genes belong to this local TCS context.
Neighborhood span25 090-27 927 nt2 838 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 090 nt27 927 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS00135GCF_000186525#HMPREF9488_RS00135
HKClassic
25 090-27 219 nt · Reverse (-)
HMPREF9488_RS00140GCF_000186525#HMPREF9488_RS00140
RROmpRCurrent focus
27 232-27 927 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS00140The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158383
Simplified PFAM architecture for RROC_1158383
PFAM domain coverage: 182 / 231 aa (78.8%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1158383
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 156-228 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS00140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key