1 HAMP#1
152-219 aa · 68 aa · 14.7% of protein
Raw token
HAMP:152:0.0000000000000236:219:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS17845
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS17845Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 464 aa (52.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-291 aa · 66 aa · 14.2% of protein
Raw token
HisKA:226:0.00000000000138:291:66:643 HATPase_c#3
337-447 aa · 111 aa · 23.9% of protein
Raw token
HATPase_c:337:5.81e-35:447:111:109- Raw architecture: HAMP:152:0.0000000000000236:219:68:69#HisKA:226:0.00000000000138:291:66:64#HATPase_c:337:5.81e-35:447:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636584.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70469-72534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_03531RefSeq proteinWP_008790613.1
Context group ID
GCF_000186525::NZ_GL636584.1::G00034Context members
HMPREF9488_RS17840HMPREF9488_RS17845
Partner locus tags
HMPREF9488_RS17840HMPREF9488_RS17845
Partner old locus tags
HMPREF9488_03530HMPREF9488_03531
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790613.1Primary protein accession used for annex mappings.
UniProt accessionE7GFI8Primary UniProt accession resolved in the annex database.
UniProt IDE7GFI8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS17845Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_03531Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636584.1Sequence record reported by the local genomic context database.
Genomic interval71 140-72 534 nt1 395 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 469-72 534 ntGCF_000186525::NZ_GL636584.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636584.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636584.1All displayed genes belong to this local TCS context.
Neighborhood span70 469-72 534 nt2 066 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 469 nt72 534 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS17840GCF_000186525#HMPREF9488_RS17840
RROmpR
70 469-71 143 nt · Forward (+)
HMPREF9488_RS17845GCF_000186525#HMPREF9488_RS17845
HKClassicCurrent focus
71 140-72 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS17845The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1783785
Simplified PFAM architecture for HKOC_1783785
PFAM domain coverage: 222 / 464 aa (47.8%)
1 aa464 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-219] | HisKA[226-289] | HATPase_c[338-446]
- Domain count: 3
- Matched identifier: HKOC_1783785
- Positioned domains: HAMP 171-219 ; HisKA 226-289 ; HATPase_c 338-446
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS17845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key