1 Response_reg#1
4-101 aa · 98 aa · 42.2% of protein
Raw token
Response_reg:4:0.0000000000157:101:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS09345
Response regulator, unclassified
Coprobacillus cateniformis · GCF_000186525
ClassRRTypeunclassifiedLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000186525#HMPREF9488_RS09345Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage98 / 232 aa (42.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000000000157:101:103:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000186525::NZ_GL636579.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span136777-137475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_01870RefSeq proteinWP_008788972.1
Context group ID
GCF_000186525::NZ_GL636579.1::G00021Context members
HMPREF9488_RS09345
Partner locus tags
HMPREF9488_RS09345
Partner old locus tags
HMPREF9488_01870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008788972.1Primary protein accession used for annex mappings.
UniProt accessionE7GAT0Primary UniProt accession resolved in the annex database.
UniProt IDE7GAT0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS09345Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_01870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636579.1Sequence record reported by the local genomic context database.
Genomic interval136 777-137 475 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 777-137 475 ntGCF_000186525::NZ_GL636579.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636579.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636579.1All displayed genes belong to this local TCS context.
Neighborhood span136 777-137 475 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 777 nt137 475 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9488_RS09345GCF_000186525#HMPREF9488_RS09345
RRunclassifiedCurrent focus
136 777-137 475 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS09345The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120013
Simplified PFAM architecture for RROC_1120013
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-102] | LytTR[131-218]
- Domain count: 2
- Matched identifier: RROC_1120013
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102 ; LytTR 131-218 ; LytTR 131-218
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS09345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key