1 dCache_1#1
123-230 aa · 108 aa · 13.5% of protein
Raw token
dCache_1:123:0.0000216:230:108:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS08990
Histidine kinase, Hybrid
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeHybridLength801 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000186525#HMPREF9488_RS08990Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length801 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage517 / 801 aa (64.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa801 aa
Domain-by-domain annotation5 items
2 HisKA#2
293-359 aa · 67 aa · 8.4% of protein
Raw token
HisKA:293:1.26e-17:359:67:643 HATPase_c#3
407-525 aa · 119 aa · 14.9% of protein
Raw token
HATPase_c:407:6.65e-26:525:119:1094 Response_reg#4
541-645 aa · 105 aa · 13.1% of protein
Raw token
Response_reg:541:4.07e-23:645:105:1115 Response_reg#5
680-797 aa · 118 aa · 14.7% of protein
Raw token
Response_reg:680:9.32e-26:797:118:111- Raw architecture: dCache_1:123:0.0000216:230:108:195#HisKA:293:1.26e-17:359:67:64#HATPase_c:407:6.65e-26:525:119:109#Response_reg:541:4.07e-23:645:105:111#Response_reg:680:9.32e-26:797:118:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000186525::NZ_GL636579.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span35442-37847Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_01798RefSeq proteinWP_237713648.1
Context group ID
GCF_000186525::NZ_GL636579.1::G00019Context members
HMPREF9488_RS08990
Partner locus tags
HMPREF9488_RS08990
Partner old locus tags
HMPREF9488_01798
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237713648.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS08990Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_01798Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636579.1Sequence record reported by the local genomic context database.
Genomic interval35 442-37 847 nt2 406 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 442-37 847 ntGCF_000186525::NZ_GL636579.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636579.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636579.1All displayed genes belong to this local TCS context.
Neighborhood span35 442-37 847 nt2 406 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 442 nt37 847 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9488_RS08990GCF_000186525#HMPREF9488_RS08990
HKHybridCurrent focus
35 442-37 847 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS08990The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0554216
Simplified PFAM architecture for HKOC_0554216
PFAM domain coverage: 413 / 801 aa (51.6%)
1 aa801 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[293-359] | HATPase_c[407-524] | Response_reg[541-651] | Response_reg[680-796]
- Domain count: 4
- Matched identifier: HKOC_0554216
- Positioned domains: HisKA 293-359 ; HATPase_c 407-524 ; Response_reg 541-651 ; Response_reg 680-796
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS08990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key