1 Response_reg#1
3-110 aa · 108 aa · 45.8% of protein
Raw token
Response_reg:3:0.0000000000000723:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS07255
Response regulator LytTR family
Coprobacillus cateniformis · GCF_000186525
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000186525#HMPREF9488_RS07255Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 236 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-227 aa · 89 aa · 37.7% of protein
Raw token
LytTR:139:0.00000000311:227:94:98- Raw architecture: Response_reg:3:0.0000000000000723:110:110:111#LytTR:139:0.00000000311:227:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000186525::NZ_GL636578.1::G00017
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span541429-542139Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_01446RefSeq proteinWP_008788561.1
Context group ID
GCF_000186525::NZ_GL636578.1::G00017Context members
HMPREF9488_RS07255
Partner locus tags
HMPREF9488_RS07255
Partner old locus tags
HMPREF9488_01446
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008788561.1Primary protein accession used for annex mappings.
UniProt accessionE7G9K7Primary UniProt accession resolved in the annex database.
UniProt IDE7G9K7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS07255Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_01446Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636578.1Sequence record reported by the local genomic context database.
Genomic interval541 429-542 139 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span541 429-542 139 ntGCF_000186525::NZ_GL636578.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636578.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636578.1All displayed genes belong to this local TCS context.
Neighborhood span541 429-542 139 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
541 429 nt542 139 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9488_RS07255GCF_000186525#HMPREF9488_RS07255
RRLytTRCurrent focus
541 429-542 139 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS07255The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988704
Simplified PFAM architecture for RROC_0988704
PFAM domain coverage: 196 / 236 aa (83.1%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-110] | LytTR[140-227]
- Domain count: 2
- Matched identifier: RROC_0988704
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; LytTR 140-227 ; LytTR 140-227
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS07255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key