1 HAMP#1
172-237 aa · 66 aa · 14.0% of protein
Raw token
HAMP:172:0.000000000000534:237:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS02360
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS02360Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 472 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
252-312 aa · 61 aa · 12.9% of protein
Raw token
HisKA:252:0.000000000164:312:61:643 HATPase_c#3
360-466 aa · 107 aa · 22.7% of protein
Raw token
HATPase_c:360:5.21e-26:466:107:109- Raw architecture: HAMP:172:0.000000000000534:237:66:69#HisKA:252:0.000000000164:312:61:64#HATPase_c:360:5.21e-26:466:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636577.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span523264-525331Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_00482RefSeq proteinWP_008787603.1
Context group ID
GCF_000186525::NZ_GL636577.1::G00007Context members
HMPREF9488_RS02355HMPREF9488_RS02360
Partner locus tags
HMPREF9488_RS02355HMPREF9488_RS02360
Partner old locus tags
HMPREF9488_00481HMPREF9488_00482
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008787603.1Primary protein accession used for annex mappings.
UniProt accessionE7G6U4Primary UniProt accession resolved in the annex database.
UniProt IDE7G6U4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS02360Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_00482Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636577.1Sequence record reported by the local genomic context database.
Genomic interval523 913-525 331 nt1 419 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span523 264-525 331 ntGCF_000186525::NZ_GL636577.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636577.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636577.1All displayed genes belong to this local TCS context.
Neighborhood span523 264-525 331 nt2 068 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
523 264 nt525 331 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS02355GCF_000186525#HMPREF9488_RS02355
RROmpR
523 264-523 926 nt · Forward (+)
HMPREF9488_RS02360GCF_000186525#HMPREF9488_RS02360
HKClassicCurrent focus
523 913-525 331 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS02360The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1696611
Simplified PFAM architecture for HKOC_1696611
PFAM domain coverage: 218 / 472 aa (46.2%)
1 aa472 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[189-237] | HisKA[252-312] | HATPase_c[360-467]
- Domain count: 3
- Matched identifier: HKOC_1696611
- Positioned domains: HAMP 189-237 ; HisKA 252-312 ; HATPase_c 360-467
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS02360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key