1 Response_reg#1
3-111 aa · 109 aa · 49.5% of protein
Raw token
Response_reg:3:2.4e-33:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS02355
Response regulator OmpR family
Coprobacillus cateniformis · GCF_000186525
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS02355Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 220 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-213 aa · 72 aa · 32.7% of protein
Raw token
Trans_reg_C:142:4.57e-22:213:77:77- Raw architecture: Response_reg:3:2.4e-33:111:111:111#Trans_reg_C:142:4.57e-22:213:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636577.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span523264-525331Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_00481RefSeq proteinWP_008787602.1
Context group ID
GCF_000186525::NZ_GL636577.1::G00007Context members
HMPREF9488_RS02355HMPREF9488_RS02360
Partner locus tags
HMPREF9488_RS02355HMPREF9488_RS02360
Partner old locus tags
HMPREF9488_00481HMPREF9488_00482
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008787602.1Primary protein accession used for annex mappings.
UniProt accessionE7G6U3Primary UniProt accession resolved in the annex database.
UniProt IDE7G6U3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS02355Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_00481Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636577.1Sequence record reported by the local genomic context database.
Genomic interval523 264-523 926 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span523 264-525 331 ntGCF_000186525::NZ_GL636577.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636577.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636577.1All displayed genes belong to this local TCS context.
Neighborhood span523 264-525 331 nt2 068 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
523 264 nt525 331 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS02355GCF_000186525#HMPREF9488_RS02355
RROmpRCurrent focus
523 264-523 926 nt · Forward (+)
HMPREF9488_RS02360GCF_000186525#HMPREF9488_RS02360
HKClassic
523 913-525 331 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS02355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1723233
Simplified PFAM architecture for RROC_1723233
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[142-213]
- Domain count: 2
- Matched identifier: RROC_1723233
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 142-213 ; Trans_reg_C 142-213
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS02355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key