1 HisKA#1
84-144 aa · 61 aa · 20.5% of protein
Raw token
HisKA:84:0.00000000000202:144:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS00490
Histidine kinase, Classic
Coprobacillus cateniformis · GCF_000186525
ClassHKTypeClassicLength297 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000186525#HMPREF9488_RS00490Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length297 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 297 aa (49.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa297 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-281 aa · 86 aa · 29.0% of protein
Raw token
HATPase_c:196:8.82e-17:281:91:109- Raw architecture: HisKA:84:0.00000000000202:144:61:64#HATPase_c:196:8.82e-17:281:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000186525::NZ_GL636577.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span99997-100890Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_00100RefSeq proteinWP_008787228.1
Context group ID
GCF_000186525::NZ_GL636577.1::G00003Context members
HMPREF9488_RS00490
Partner locus tags
HMPREF9488_RS00490
Partner old locus tags
HMPREF9488_00100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008787228.1Primary protein accession used for annex mappings.
UniProt accessionE7G5R2Primary UniProt accession resolved in the annex database.
UniProt IDE7G5R2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS00490Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_00100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636577.1Sequence record reported by the local genomic context database.
Genomic interval99 997-100 890 nt894 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span99 997-100 890 ntGCF_000186525::NZ_GL636577.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636577.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636577.1All displayed genes belong to this local TCS context.
Neighborhood span99 997-100 890 nt894 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 997 nt100 890 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9488_RS00490GCF_000186525#HMPREF9488_RS00490
HKClassicCurrent focus
99 997-100 890 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS00490The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2889769
Simplified PFAM architecture for HKOC_2889769
PFAM domain coverage: 157 / 297 aa (52.9%)
1 aa297 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-144] | HATPase_c[197-294]
- Domain count: 2
- Matched identifier: HKOC_2889769
- Positioned domains: HisKA 86-144 ; HATPase_c 197-294
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS00490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key