1 Response_reg#1
5-111 aa · 107 aa · 47.3% of protein
Raw token
Response_reg:5:1.37e-33:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9488_RS00175
Response regulator OmpR family
Coprobacillus cateniformis · GCF_000186525
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000186525#HMPREF9488_RS00175Stable P2CS identifier used across views.
GenomeGCF_000186525Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 226 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:145:4.29e-30:218:77:77- Raw architecture: Response_reg:5:1.37e-33:111:109:111#Trans_reg_C:145:4.29e-30:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000186525::NZ_GL636577.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33822-36264Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9488_00035RefSeq proteinWP_008787163.1
Context group ID
GCF_000186525::NZ_GL636577.1::G00002Context members
HMPREF9488_RS00175HMPREF9488_RS00180
Partner locus tags
HMPREF9488_RS00175HMPREF9488_RS00180
Partner old locus tags
HMPREF9488_00035HMPREF9488_00036
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008787163.1Primary protein accession used for annex mappings.
UniProt accessionE7G5J7Primary UniProt accession resolved in the annex database.
UniProt IDE7G5J7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9488_RS00175Primary locus identifier stored in the genes table.
Old locus tagHMPREF9488_00035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GL636577.1Sequence record reported by the local genomic context database.
Genomic interval33 822-34 502 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 822-36 264 ntGCF_000186525::NZ_GL636577.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000186525::NZ_GL636577.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GL636577.1All displayed genes belong to this local TCS context.
Neighborhood span33 822-36 264 nt2 443 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 822 nt36 264 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF9488_RS00175GCF_000186525#HMPREF9488_RS00175
RROmpRCurrent focus
33 822-34 502 nt · Forward (+)
HMPREF9488_RS00180GCF_000186525#HMPREF9488_RS00180
HKClassic
34 492-36 264 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS00175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408800
Simplified PFAM architecture for RROC_1408800
PFAM domain coverage: 179 / 226 aa (79.2%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-110] | Trans_reg_C[146-218]
- Domain count: 2
- Matched identifier: RROC_1408800
- Positioned domains: Response_reg 5-110 ; Response_reg 5-110 ; Trans_reg_C 146-218 ; Trans_reg_C 146-218
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS00175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 100 884 · GCF_000186525
AssemblyCoprobacillus_sp_29_1_V1 · Scaffoldhaploid
Genome composition3 857 363 bp · 31,0% GCCoprobacillus cateniformis
Signal transduction countsGenes 69 · HK 31 · RR 36CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCoprobacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Coprobacillus
Related genes
Preview from the same derived genome key