1 Response_reg#1
164-276 aa · 113 aa · 27.3% of protein
Raw token
Response_reg:164:3.91e-29:276:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF9347_RS02800
Response regulator, unclassified
Escherichia coli MS 124-1 · GCF_000179135
ClassRRTypeunclassifiedLength414 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000179135#HMPREF9347_RS02800Stable P2CS identifier used across views.
GenomeGCF_000179135Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regHpt
Protein length414 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 414 aa (45.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa414 aa
Domain-by-domain annotation2 items
2 Hpt#2
322-395 aa · 74 aa · 17.9% of protein
Raw token
Hpt:322:0.00000000000158:395:78:84- Raw architecture: Response_reg:164:3.91e-29:276:114:111#Hpt:322:0.00000000000158:395:78:84
- Domain description: 1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000179135::NZ_ADWT01000082.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13971-15215Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF9347_05358RefSeq proteinWP_000641988.1
Context group ID
GCF_000179135::NZ_ADWT01000082.1::G00004Context members
HMPREF9347_RS02800
Partner locus tags
HMPREF9347_RS02800
Partner old locus tags
HMPREF9347_05358
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000641988.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF9347_RS02800Primary locus identifier stored in the genes table.
Old locus tagHMPREF9347_05358Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ADWT01000082.1Sequence record reported by the local genomic context database.
Genomic interval13 971-15 215 nt1 245 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 971-15 215 ntGCF_000179135::NZ_ADWT01000082.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000179135::NZ_ADWT01000082.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ADWT01000082.1All displayed genes belong to this local TCS context.
Neighborhood span13 971-15 215 nt1 245 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 971 nt15 215 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF9347_RS02800GCF_000179135#HMPREF9347_RS02800
RRunclassifiedCurrent focus
13 971-15 215 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005389745#FFF64_RS03035Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c + Response_reg + Hpt3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0319083
Simplified PFAM architecture for RROC_0319083
PFAM domain coverage: 299 / 444 aa (67.3%)
1 aa444 aa
HATPase_cResponse_regHpt
- Simplified architecture: HATPase_c + Response_reg + Hpt
- Raw architecture: HATPase_c[61-171] | Response_reg[194-306] | Hpt[352-426]
- Domain count: 3
- Matched identifier: RROC_0319083
- Positioned domains: HATPase_c 61-171 ; HATPase_c 61-171 ; Response_reg 194-306 ; Response_reg 194-306 ; Hpt 352-426 ; Hpt 352-426
Cluster members and taxonomy
Representative gene: GCF_005389745#FFF64_RS03035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 679 205 · GCF_000179135
AssemblyASM17913v1 · Contighaploid
Genome composition5 394 127 bp · 50,5% GCEscherichia coli MS 124-1
Signal transduction countsGenes 63 · HK 29 · RR 34CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key