1 Response_reg#1
194-306 aa · 113 aa · 25.5% of protein
Raw token
Response_reg:194:1.04e-28:306:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FFF64_RS03035
Response regulator, unclassified
Escherichia coli · GCF_005389745
ClassRRTypeunclassifiedLength444 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_005389745#FFF64_RS03035Stable P2CS identifier used across views.
GenomeGCF_005389745Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regHpt
Protein length444 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 444 aa (42.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa444 aa
Domain-by-domain annotation2 items
2 Hpt#2
352-425 aa · 74 aa · 16.7% of protein
Raw token
Hpt:352:0.00000000000143:425:78:84- Raw architecture: Response_reg:194:1.04e-28:306:114:111#Hpt:352:0.00000000000143:425:78:84
- Domain description: 1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_005389745::NZ_BFVM01000031.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span63205-64539Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHmCmsJML295_00562RefSeq proteinWP_137513663.1
Context group ID
GCF_005389745::NZ_BFVM01000031.1::G00009Context members
FFF64_RS03035
Partner locus tags
FFF64_RS03035
Partner old locus tags
HmCmsJML295_00562
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_137513663.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFFF64_RS03035Primary locus identifier stored in the genes table.
Old locus tagHmCmsJML295_00562Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BFVM01000031.1Sequence record reported by the local genomic context database.
Genomic interval63 205-64 539 nt1 335 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 205-64 539 ntGCF_005389745::NZ_BFVM01000031.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_005389745::NZ_BFVM01000031.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BFVM01000031.1All displayed genes belong to this local TCS context.
Neighborhood span63 205-64 539 nt1 335 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 205 nt64 539 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FFF64_RS03035GCF_005389745#FFF64_RS03035
RRunclassifiedCurrent focus
63 205-64 539 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005389745#FFF64_RS03035The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg + Hpt3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0319083
Simplified PFAM architecture for RROC_0319083
PFAM domain coverage: 299 / 444 aa (67.3%)
1 aa444 aa
HATPase_cResponse_regHpt
- Simplified architecture: HATPase_c + Response_reg + Hpt
- Raw architecture: HATPase_c[61-171] | Response_reg[194-306] | Hpt[352-426]
- Domain count: 3
- Matched identifier: RROC_0319083
- Positioned domains: HATPase_c 61-171 ; HATPase_c 61-171 ; Response_reg 194-306 ; Response_reg 194-306 ; Hpt 352-426 ; Hpt 352-426
Cluster members and taxonomy
Representative gene: GCF_005389745#FFF64_RS03035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_005389745
AssemblyASM538974v1 · Scaffoldhaploid
Genome composition4 610 625 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 67 · HK 32 · RR 35CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key