1 HisKA#1
210-274 aa · 65 aa · 14.9% of protein
Raw token
HisKA:210:0.0000000000000286:274:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BRYFOR_RS00870
Histidine kinase, Classic
Marvinbryantia formatexigens DSM 14469 · GCF_000173815
ClassHKTypeClassicLength436 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000173815#BRYFOR_RS00870Stable P2CS identifier used across views.
GenomeGCF_000173815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Marvinbryantia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length436 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 436 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa436 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-433 aa · 112 aa · 25.7% of protein
Raw token
HATPase_c:322:5.64e-27:433:112:109- Raw architecture: HisKA:210:0.0000000000000286:274:65:64#HATPase_c:322:5.64e-27:433:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000173815::NZ_ACCL02000001.1::G00081
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202960-204952Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBRYFOR_05203RefSeq proteinWP_006860005.1
Context group ID
GCF_000173815::NZ_ACCL02000001.1::G00081Context members
BRYFOR_RS00870BRYFOR_RS00875
Partner locus tags
BRYFOR_RS00870BRYFOR_RS00875
Partner old locus tags
BRYFOR_05203BRYFOR_05205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006860005.1Primary protein accession used for annex mappings.
UniProt accessionC6L9B3Primary UniProt accession resolved in the annex database.
UniProt IDC6L9B3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBRYFOR_RS00870Primary locus identifier stored in the genes table.
Old locus tagBRYFOR_05203Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACCL02000001.1Sequence record reported by the local genomic context database.
Genomic interval202 960-204 270 nt1 311 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span202 960-204 952 ntGCF_000173815::NZ_ACCL02000001.1::G00081
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173815::NZ_ACCL02000001.1::G00081Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACCL02000001.1All displayed genes belong to this local TCS context.
Neighborhood span202 960-204 952 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 960 nt204 952 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BRYFOR_RS00870GCF_000173815#BRYFOR_RS00870
HKClassicCurrent focus
202 960-204 270 nt · Reverse (-)
BRYFOR_RS00875GCF_000173815#BRYFOR_RS00875
RROmpR
204 263-204 952 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173815#BRYFOR_RS00870The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2113160
Simplified PFAM architecture for HKOC_2113160
PFAM domain coverage: 175 / 436 aa (40.1%)
1 aa436 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[211-274] | HATPase_c[322-432]
- Domain count: 2
- Matched identifier: HKOC_2113160
- Positioned domains: HisKA 211-274 ; HATPase_c 322-432
Cluster members and taxonomy
Representative gene: GCF_000173815#BRYFOR_RS00870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 749 · GCF_000173815
AssemblyASM17381v1 · Contighaploid
Genome composition4 548 960 bp · 49,5% GCMarvinbryantia formatexigens DSM 14469
Signal transduction countsGenes 148 · HK 70 · RR 78CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMarvinbryantia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Marvinbryantia
Related genes
Preview from the same derived genome key