1 Response_reg#1
4-112 aa · 109 aa · 20.6% of protein
Raw token
Response_reg:4:1.4e-32:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BRYFOR_RS00350
Response regulator, unclassified
Marvinbryantia formatexigens DSM 14469 · GCF_000173815
ClassRRTypeunclassifiedLength528 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000173815#BRYFOR_RS00350Stable P2CS identifier used across views.
GenomeGCF_000173815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Marvinbryantia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 528 aa (34.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
406-447 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:406:0.0000232:447:42:423 HTH_AraC#3
464-495 aa · 32 aa · 6.1% of protein
Raw token
HTH_AraC:464:0.000000751:495:32:42- Raw architecture: Response_reg:4:1.4e-32:112:109:111#HTH_AraC:406:0.0000232:447:42:42#HTH_AraC:464:0.000000751:495:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000173815::NZ_ACCL02000001.1::G00080
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73611-75197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBRYFOR_05080RefSeq proteinWP_040781228.1
Context group ID
GCF_000173815::NZ_ACCL02000001.1::G00080Context members
BRYFOR_RS00350
Partner locus tags
BRYFOR_RS00350
Partner old locus tags
BRYFOR_05080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_040781228.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBRYFOR_RS00350Primary locus identifier stored in the genes table.
Old locus tagBRYFOR_05080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ACCL02000001.1Sequence record reported by the local genomic context database.
Genomic interval73 611-75 197 nt1 587 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 611-75 197 ntGCF_000173815::NZ_ACCL02000001.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173815::NZ_ACCL02000001.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ACCL02000001.1All displayed genes belong to this local TCS context.
Neighborhood span73 611-75 197 nt1 587 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 611 nt75 197 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BRYFOR_RS00350GCF_000173815#BRYFOR_RS00350
RRunclassifiedCurrent focus
73 611-75 197 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173815#BRYFOR_RS00350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0114529
Simplified PFAM architecture for RROC_0114529
PFAM domain coverage: 284 / 528 aa (53.8%)
1 aa528 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-114] | GGDEF_2[165-264] | HTH_18[423-495]
- Domain count: 3
- Matched identifier: RROC_0114529
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; GGDEF_2 165-264 ; GGDEF_2 165-264 ; HTH_18 423-495 ; HTH_18 423-495
Cluster members and taxonomy
Representative gene: GCF_000173815#BRYFOR_RS00350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 478 749 · GCF_000173815
AssemblyASM17381v1 · Contighaploid
Genome composition4 548 960 bp · 49,5% GCMarvinbryantia formatexigens DSM 14469
Signal transduction countsGenes 148 · HK 70 · RR 78CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMarvinbryantia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Marvinbryantia
Related genes
Preview from the same derived genome key