1 Response_reg#1
6-110 aa · 105 aa · 44.1% of protein
Raw token
Response_reg:6:5.49e-20:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFCAT_RS06325
Response regulator LytTR family
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 · GCF_000173455
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000173455#BIFCAT_RS06325Stable P2CS identifier used across views.
GenomeGCF_000173455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 238 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
139-229 aa · 91 aa · 38.2% of protein
Raw token
LytTR:139:4.65e-17:229:97:98- Raw architecture: Response_reg:6:5.49e-20:110:108:111#LytTR:139:4.65e-17:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000173455::NZ_ABXY01000021.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span52374-53090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFCAT_01496RefSeq proteinWP_003835946.1
Context group ID
GCF_000173455::NZ_ABXY01000021.1::G00004Context members
BIFCAT_RS06325
Partner locus tags
BIFCAT_RS06325
Partner old locus tags
BIFCAT_01496
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003835946.1Primary protein accession used for annex mappings.
UniProt accessionB6XWA6Primary UniProt accession resolved in the annex database.
UniProt IDB6XWA6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFCAT_RS06325Primary locus identifier stored in the genes table.
Old locus tagBIFCAT_01496Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABXY01000021.1Sequence record reported by the local genomic context database.
Genomic interval52 374-53 090 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 374-53 090 ntGCF_000173455::NZ_ABXY01000021.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173455::NZ_ABXY01000021.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABXY01000021.1All displayed genes belong to this local TCS context.
Neighborhood span52 374-53 090 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 374 nt53 090 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BIFCAT_RS06325GCF_000173455#BIFCAT_RS06325
RRLytTRCurrent focus
52 374-53 090 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS06325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932697
Simplified PFAM architecture for RROC_0932697
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-110] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0932697
- Positioned domains: Response_reg 6-110 ; Response_reg 6-110 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS06325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 552 · GCF_000173455
AssemblyASM17345v1 · Contighaploid
Genome composition2 058 429 bp · 56,0% GCBifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key