1 HAMP#1
56-127 aa · 72 aa · 20.1% of protein
Raw token
HAMP:56:3.74e-18:127:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BIFCAT_RS04475
Histidine kinase, Classic
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 · GCF_000173455
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000173455#BIFCAT_RS04475Stable P2CS identifier used across views.
GenomeGCF_000173455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 358 aa (69.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.00000000000000764:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.0% of protein
Raw token
HATPase_c:240:1.7e-23:350:112:109- Raw architecture: HAMP:56:3.74e-18:127:72:69#HisKA:131:0.00000000000000764:195:65:64#HATPase_c:240:1.7e-23:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000173455::NZ_ABXY01000011.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span631694-633533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBIFCAT_01048RefSeq proteinWP_033513340.1
Context group ID
GCF_000173455::NZ_ABXY01000011.1::G00008Context members
BIFCAT_RS04470BIFCAT_RS04475
Partner locus tags
BIFCAT_RS04470BIFCAT_RS04475
Partner old locus tags
BIFCAT_01047BIFCAT_01048
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033513340.1Primary protein accession used for annex mappings.
UniProt accessionA0A1V8PPX0Primary UniProt accession resolved in the annex database.
UniProt IDA0A1V8PPX0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBIFCAT_RS04475Primary locus identifier stored in the genes table.
Old locus tagBIFCAT_01048Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABXY01000011.1Sequence record reported by the local genomic context database.
Genomic interval632 457-633 533 nt1 077 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span631 694-633 533 ntGCF_000173455::NZ_ABXY01000011.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000173455::NZ_ABXY01000011.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABXY01000011.1All displayed genes belong to this local TCS context.
Neighborhood span631 694-633 533 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
631 694 nt633 533 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BIFCAT_RS04470GCF_000173455#BIFCAT_RS04470
RROmpR
631 694-632 422 nt · Forward (+)
BIFCAT_RS04475GCF_000173455#BIFCAT_RS04475
HKClassicCurrent focus
632 457-633 533 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173455#BIFCAT_RS04475The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2758951
Simplified PFAM architecture for HKOC_2758951
PFAM domain coverage: 231 / 358 aa (64.5%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2758951
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000173455#BIFCAT_RS04475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 552 · GCF_000173455
AssemblyASM17345v1 · Contighaploid
Genome composition2 058 429 bp · 56,0% GCBifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key