1 HisKA#1
119-178 aa · 60 aa · 17.6% of protein
Raw token
HisKA:119:0.0000461:178:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1636_RS12485
Histidine kinase, Classic
Enterococcus faecium E1636 · GCF_000172835
ClassHKTypeClassicLength341 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172835#EFME1636_RS12485Stable P2CS identifier used across views.
GenomeGCF_000172835Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length341 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 341 aa (49.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa341 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
223-332 aa · 110 aa · 32.3% of protein
Raw token
HATPase_c:223:1.61e-29:332:110:109- Raw architecture: HisKA:119:0.0000461:178:62:64#HATPase_c:223:1.61e-29:332:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172835::NZ_ABRY01000094.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10585-12302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1636_1875RefSeq proteinWP_002298883.1
Context group ID
GCF_000172835::NZ_ABRY01000094.1::G00008Context members
EFME1636_RS12485EFME1636_RS12490
Partner locus tags
EFME1636_RS12485EFME1636_RS12490
Partner old locus tags
EfmE1636_1875EfmE1636_1876
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002298883.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1636_RS12485Primary locus identifier stored in the genes table.
Old locus tagEfmE1636_1875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABRY01000094.1Sequence record reported by the local genomic context database.
Genomic interval10 585-11 610 nt1 026 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 585-12 302 ntGCF_000172835::NZ_ABRY01000094.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172835::NZ_ABRY01000094.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABRY01000094.1All displayed genes belong to this local TCS context.
Neighborhood span10 585-12 302 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 585 nt12 302 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1636_RS12485GCF_000172835#EFME1636_RS12485
HKClassicCurrent focus
10 585-11 610 nt · Reverse (-)
EFME1636_RS12490GCF_000172835#EFME1636_RS12490
RROmpR
11 628-12 302 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172835#EFME1636_RS12485The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2833949
Simplified PFAM architecture for HKOC_2833949
PFAM domain coverage: 110 / 341 aa (32.3%)
1 aa341 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-333]
- Domain count: 1
- Matched identifier: HKOC_2833949
- Positioned domains: HATPase_c 224-333
Cluster members and taxonomy
Representative gene: GCF_000172835#EFME1636_RS12485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 544 875 · GCF_000172835
AssemblyASM17283v1 · Contighaploid
Genome composition2 838 335 bp · 38,0% GCEnterococcus faecium E1636
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key