1 HAMP#1
179-244 aa · 66 aa · 13.7% of protein
Raw token
HAMP:179:0.000000000000447:244:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1636_RS05700
Histidine kinase, Classic
Enterococcus faecium E1636 · GCF_000172835
ClassHKTypeClassicLength482 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172835#EFME1636_RS05700Stable P2CS identifier used across views.
GenomeGCF_000172835Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 482 aa (50.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-321 aa · 67 aa · 13.9% of protein
Raw token
HisKA:255:0.00000000000000146:321:67:643 HATPase_c#3
366-475 aa · 110 aa · 22.8% of protein
Raw token
HATPase_c:366:6.3e-31:475:110:109- Raw architecture: HAMP:179:0.000000000000447:244:66:69#HisKA:255:0.00000000000000146:321:67:64#HATPase_c:366:6.3e-31:475:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172835::NZ_ABRY01000024.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47974-50138Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1636_0364RefSeq proteinWP_002288588.1
Context group ID
GCF_000172835::NZ_ABRY01000024.1::G00019Context members
EFME1636_RS05700EFME1636_RS05705
Partner locus tags
EFME1636_RS05700EFME1636_RS05705
Partner old locus tags
EfmE1636_0364EfmE1636_0365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002288588.1Primary protein accession used for annex mappings.
UniProt accessionQ3XZ23Primary UniProt accession resolved in the annex database.
UniProt IDQ3XZ23_ENTFDDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1636_RS05700Primary locus identifier stored in the genes table.
Old locus tagEfmE1636_0364Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABRY01000024.1Sequence record reported by the local genomic context database.
Genomic interval47 974-49 422 nt1 449 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 974-50 138 ntGCF_000172835::NZ_ABRY01000024.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172835::NZ_ABRY01000024.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABRY01000024.1All displayed genes belong to this local TCS context.
Neighborhood span47 974-50 138 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 974 nt50 138 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1636_RS05700GCF_000172835#EFME1636_RS05700
HKClassicCurrent focus
47 974-49 422 nt · Reverse (-)
EFME1636_RS05705GCF_000172835#EFME1636_RS05705
RROmpR
49 422-50 138 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157435#EFPG_RS03405Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1549839
Simplified PFAM architecture for HKOC_1549839
PFAM domain coverage: 225 / 488 aa (46.1%)
1 aa488 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-243] | HisKA[256-320] | HATPase_c[367-476]
- Domain count: 3
- Matched identifier: HKOC_1549839
- Positioned domains: HAMP 194-243 ; HisKA 256-320 ; HATPase_c 367-476
Cluster members and taxonomy
Representative gene: GCF_000157435#EFPG_RS03405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 544 875 · GCF_000172835
AssemblyASM17283v1 · Contighaploid
Genome composition2 838 335 bp · 38,0% GCEnterococcus faecium E1636
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key