1 HAMP#1
54-123 aa · 70 aa · 20.2% of protein
Raw token
HAMP:54:0.0000000136:123:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1636_RS04405
Histidine kinase, Classic
Enterococcus faecium E1636 · GCF_000172835
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172835#EFME1636_RS04405Stable P2CS identifier used across views.
GenomeGCF_000172835Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 347 aa (70.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation3 items
2 HisKA#2
129-194 aa · 66 aa · 19.0% of protein
Raw token
HisKA:129:0.00000000000000446:194:66:643 HATPase_c#3
238-344 aa · 107 aa · 30.8% of protein
Raw token
HATPase_c:238:1.74e-31:344:107:109- Raw architecture: HAMP:54:0.0000000136:123:70:69#HisKA:129:0.00000000000000446:194:66:64#HATPase_c:238:1.74e-31:344:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172835::NZ_ABRY01000011.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4573-6287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1636_0083RefSeq proteinWP_002294614.1
Context group ID
GCF_000172835::NZ_ABRY01000011.1::G00020Context members
EFME1636_RS04405EFME1636_RS04410
Partner locus tags
EFME1636_RS04405EFME1636_RS04410
Partner old locus tags
EfmE1636_0083EfmE1636_0084
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002294614.1Primary protein accession used for annex mappings.
UniProt accessionA0A829F0D5Primary UniProt accession resolved in the annex database.
UniProt IDA0A829F0D5_ENTFCDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1636_RS04405Primary locus identifier stored in the genes table.
Old locus tagEfmE1636_0083Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABRY01000011.1Sequence record reported by the local genomic context database.
Genomic interval4 573-5 616 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 573-6 287 ntGCF_000172835::NZ_ABRY01000011.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172835::NZ_ABRY01000011.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABRY01000011.1All displayed genes belong to this local TCS context.
Neighborhood span4 573-6 287 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 573 nt6 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1636_RS04405GCF_000172835#EFME1636_RS04405
HKClassicCurrent focus
4 573-5 616 nt · Reverse (-)
EFME1636_RS04410GCF_000172835#EFME1636_RS04410
RROmpR
5 619-6 287 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172655#EFME1071_RS09220Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2810211
Simplified PFAM architecture for HKOC_2810211
PFAM domain coverage: 226 / 347 aa (65.1%)
1 aa347 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[71-123] | HisKA[129-193] | HATPase_c[238-345]
- Domain count: 3
- Matched identifier: HKOC_2810211
- Positioned domains: HAMP 71-123 ; HisKA 129-193 ; HATPase_c 238-345
Cluster members and taxonomy
Representative gene: GCF_000172655#EFME1071_RS09220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 544 875 · GCF_000172835
AssemblyASM17283v1 · Contighaploid
Genome composition2 838 335 bp · 38,0% GCEnterococcus faecium E1636
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key