1 Response_reg#1
4-114 aa · 111 aa · 50.0% of protein
Raw token
Response_reg:4:9.48e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1636_RS04410
Response regulator OmpR family
Enterococcus faecium E1636 · GCF_000172835
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172835#EFME1636_RS04410Stable P2CS identifier used across views.
GenomeGCF_000172835Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 222 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-219 aa · 69 aa · 31.1% of protein
Raw token
Trans_reg_C:151:4.89e-24:219:71:77- Raw architecture: Response_reg:4:9.48e-35:114:111:111#Trans_reg_C:151:4.89e-24:219:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172835::NZ_ABRY01000011.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4573-6287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1636_0084RefSeq proteinWP_002297412.1
Context group ID
GCF_000172835::NZ_ABRY01000011.1::G00020Context members
EFME1636_RS04405EFME1636_RS04410
Partner locus tags
EFME1636_RS04405EFME1636_RS04410
Partner old locus tags
EfmE1636_0083EfmE1636_0084
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002297412.1Primary protein accession used for annex mappings.
UniProt accessionA0A829F512Primary UniProt accession resolved in the annex database.
UniProt IDA0A829F512_ENTFCDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1636_RS04410Primary locus identifier stored in the genes table.
Old locus tagEfmE1636_0084Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABRY01000011.1Sequence record reported by the local genomic context database.
Genomic interval5 619-6 287 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 573-6 287 ntGCF_000172835::NZ_ABRY01000011.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172835::NZ_ABRY01000011.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABRY01000011.1All displayed genes belong to this local TCS context.
Neighborhood span4 573-6 287 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 573 nt6 287 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1636_RS04405GCF_000172835#EFME1636_RS04405
HKClassic
4 573-5 616 nt · Reverse (-)
EFME1636_RS04410GCF_000172835#EFME1636_RS04410
RROmpRCurrent focus
5 619-6 287 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS10520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637568
Simplified PFAM architecture for RROC_1637568
PFAM domain coverage: 180 / 222 aa (81.1%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[150-219]
- Domain count: 2
- Matched identifier: RROC_1637568
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 150-219 ; Trans_reg_C 150-219
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS10520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 544 875 · GCF_000172835
AssemblyASM17283v1 · Contighaploid
Genome composition2 838 335 bp · 38,0% GCEnterococcus faecium E1636
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key