1 HisKA_3#1
182-245 aa · 64 aa · 17.3% of protein
Raw token
HisKA_3:182:5.09e-16:245:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1162_RS10350
Histidine kinase, Classic
Enterococcus faecium E1162 · GCF_000172675
ClassHKTypeClassicLength369 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172675#EFME1162_RS10350Stable P2CS identifier used across views.
GenomeGCF_000172675Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length369 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 369 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa369 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
285-366 aa · 82 aa · 22.2% of protein
Raw token
HATPase_c:285:0.000000221:366:100:109- Raw architecture: HisKA_3:182:5.09e-16:245:66:68#HATPase_c:285:0.000000221:366:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172675::NZ_ABQJ01000007.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11418-13153Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1162_0139RefSeq proteinWP_002317394.1
Context group ID
GCF_000172675::NZ_ABQJ01000007.1::G00018Context members
EFME1162_RS10345EFME1162_RS10350
Partner locus tags
EFME1162_RS10345EFME1162_RS10350
Partner old locus tags
EfmE1162_0138EfmE1162_0139
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002317394.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3GYF7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3GYF7_ENTFCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1162_RS10350Primary locus identifier stored in the genes table.
Old locus tagEfmE1162_0139Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABQJ01000007.1Sequence record reported by the local genomic context database.
Genomic interval12 044-13 153 nt1 110 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 418-13 153 ntGCF_000172675::NZ_ABQJ01000007.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172675::NZ_ABQJ01000007.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABQJ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span11 418-13 153 nt1 736 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 418 nt13 153 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1162_RS10345GCF_000172675#EFME1162_RS10345
RRNarL
11 418-12 047 nt · Reverse (-)
EFME1162_RS10350GCF_000172675#EFME1162_RS10350
HKClassicCurrent focus
12 044-13 153 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172675#EFME1162_RS10350The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c_52 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2691252
Simplified PFAM architecture for HKOC_2691252
PFAM domain coverage: 150 / 369 aa (40.7%)
1 aa369 aa
HisKA_3HATPase_c_5
- Simplified architecture: HisKA_3 + HATPase_c_5
- Raw architecture: HisKA_3[182-245] | HATPase_c_5[279-364]
- Domain count: 2
- Matched identifier: HKOC_2691252
- Positioned domains: HisKA_3 182-245 ; HATPase_c_5 279-364
Cluster members and taxonomy
Representative gene: GCF_000172675#EFME1162_RS10350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 535 206 · GCF_000172675
AssemblyASM17267v1 · Contighaploid
Genome composition2 711 396 bp · 38,0% GCEnterococcus faecium E1162
Signal transduction countsGenes 33 · HK 16 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key