1 sCache_like#1
35-151 aa · 117 aa · 20.2% of protein
Raw token
sCache_like:35:2.43e-35:151:117:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME1071_RS03945
Histidine kinase, Classic
Enterococcus faecium E1071 · GCF_000172655
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000172655#EFME1071_RS03945Stable P2CS identifier used across views.
GenomeGCF_000172655Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage286 / 578 aa (49.5%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation3 items
2 HisKA#2
360-422 aa · 63 aa · 10.9% of protein
Raw token
HisKA:360:0.0000000000000448:422:63:643 HATPase_c#3
471-576 aa · 106 aa · 18.3% of protein
Raw token
HATPase_c:471:1.53e-30:576:107:109- Raw architecture: sCache_like:35:2.43e-35:151:117:114#HisKA:360:0.0000000000000448:422:63:64#HATPase_c:471:1.53e-30:576:107:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000172655::NZ_ABQI01000004.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5584-8021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE1071_0080RefSeq proteinWP_002293703.1
Context group ID
GCF_000172655::NZ_ABQI01000004.1::G00020Context members
EFME1071_RS03945EFME1071_RS03950
Partner locus tags
EFME1071_RS03945EFME1071_RS03950
Partner old locus tags
EfmE1071_0080EfmE1071_0081
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002293703.1Primary protein accession used for annex mappings.
UniProt accessionA0A829ET76Primary UniProt accession resolved in the annex database.
UniProt IDA0A829ET76_ENTFCDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME1071_RS03945Primary locus identifier stored in the genes table.
Old locus tagEfmE1071_0080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_ABQI01000004.1Sequence record reported by the local genomic context database.
Genomic interval5 584-7 320 nt1 737 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 584-8 021 ntGCF_000172655::NZ_ABQI01000004.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000172655::NZ_ABQI01000004.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ABQI01000004.1All displayed genes belong to this local TCS context.
Neighborhood span5 584-8 021 nt2 438 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 584 nt8 021 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFME1071_RS03945GCF_000172655#EFME1071_RS03945
HKClassicCurrent focus
5 584-7 320 nt · Reverse (-)
EFME1071_RS03950GCF_000172655#EFME1071_RS03950
RROmpR
7 317-8 021 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172655#EFME1071_RS03945The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1172287
Simplified PFAM architecture for HKOC_1172287
PFAM domain coverage: 277 / 578 aa (47.9%)
1 aa578 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[38-143] | HisKA[360-423] | HATPase_c[471-577]
- Domain count: 3
- Matched identifier: HKOC_1172287
- Positioned domains: sCache_like 38-143 ; HisKA 360-423 ; HATPase_c 471-577
Cluster members and taxonomy
Representative gene: GCF_000172655#EFME1071_RS03945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 535 205 · GCF_000172655
AssemblyASM17265v1 · Contighaploid
Genome composition2 700 770 bp · 38,0% GCEnterococcus faecium E1071
Signal transduction countsGenes 39 · HK 19 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key